Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_008520.2
Length=132239
Score E
Sequences producing significant alignments: (Bits) Value
seq50758 116 3e-21
seq51452 100 2e-16
seq50708 89.7 4e-13
seq37995 82.4 6e-11
>seq50758
Length=122349
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246
||||| |||||||| |||||| ||||||| |||||||| || |||| ||||
Sbjct 118720 ATGCAGATTTTTGTGAAAACGTTGACCGGGAAAACCATCACTTTGGAGGTGGAAAGTTCT 118779
Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306
||| || ||| | | || ||| || ||| ||||| || || ||||| |||||
Sbjct 118780 GATACTATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAG 118839
Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366
|| ||||| || | |||||| || |||||||||||| | ||| |||| |||||||||
Sbjct 118840 CAGAGGCTGATCTTTGCGGGGAAGCAATTGGAAGATGGAAGGACTCTGGCTGATTATAAT 118899
Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413
|| || || || || || || || | || | ||||| || |||||
Sbjct 118900 ATTCAGAAGGAGTCCACCCTGCACCTTGTCCTCCGTCTCCGTGGTGG 118946
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246
||||| || || |||||||| | || || || || || ||| | ||| ||| | |
Sbjct 118492 ATGCAGATCTTCGTCAAAACACTCACTGGGAAGACTATCACCCTCGAAGTCGAAAGCTCC 118551
Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306
||| || ||| | | || || || ||| ||||| || || | || || ||
Sbjct 118552 GATACTATTGACAATGTTAAGGCGAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAG 118611
Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366
|| ||| | || | ||| || || || ||||||||| | |||| | || |||||||||
Sbjct 118612 CAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGGAGAACTTTAGCTGATTATAAT 118671
Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413
|| || || ||||| ||||| || || ||| | ||||| || |||||
Sbjct 118672 ATCCAGAAGGAATCCACACTTCACTTGGTGCTCCGTCTTCGTGGTGG 118718
>seq51452
Length=252770
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245
|||||||||||| || ||||| | ||||| ||||| || || ||||| || |
Sbjct 59127 AATGCAAATTTTCGTTAAAACATTAACCGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 59068
Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305
||| || ||| | || || |||||| || || ||||| |||| || ||
Sbjct 59067 GGATACTATTGATAATGTTAAGACGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 59008
Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365
|||||| || |||| ||| || || |||||||||||| ||| |||| ||||||||
Sbjct 59007 ACAAAGACTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 58948
Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413
||| ||||| || || ||||| || |||| | || || || |||||
Sbjct 58947 TATTCAAAAGGAGTCAACACTCCACCTAGTCCTCCGCCTTCGTGGTGG 58900
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245
||||||||| ||||| || || | || || ||||| || || ||||| || |
Sbjct 58443 AATGCAAATCTTTGTTAAGACCTTAACTGGGAAAACAATCACATTGGAAGTTGAGAGCTC 58384
Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305
|| | ||| | | || || ||||||| ||||| |||||| | || |||||
Sbjct 58383 GGACACGATTGACAATGTTAAGGCAAAAATTCAAGACAAGGAAGGCATCCCACCGGATCA 58324
Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365
|||||||| || | ||| || || |||||||||||| | ||| | || || |||||
Sbjct 58323 GCAAAGGCTGATATTTGCAGGAAAGCAATTGGAAGATGGGAGGACTCTTGCTGACTATAA 58264
Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413
|| ||||| || || ||||| || |||| | || || || |||||
Sbjct 58263 CATTCAAAAGGAGTCAACACTCCACCTAGTCCTTCGCCTTCGTGGTGG 58216
>seq50708
Length=321788
Score = 89.7 bits (98), Expect = 4e-13
Identities = 111/151 (74%), Gaps = 1/151 (1%)
Strand=Plus/Minus
Query 111263 TAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATG 111322
||||||||| | || ||||| ||||| |||| |||||||||||| | |||| ||
Sbjct 282277 TAAAACAAAGA-TTCAAGACAAGGAAGGAATTCCTCCGGATCAACAAAGGTTGATTTTTG 282219
Query 111323 CGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTA 111382
| || |||||| | || ||| ||| | || |||||||| || || || ||||| |
Sbjct 282218 CTGGAAAACAACTCGAGGATGGGCGAACACTTGCTGATTATAACATTCAGAAGGAATCCA 282159
Query 111383 CACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413
| || ||| | ||||||||||| ||||| ||
Sbjct 282158 CTCTCCATCTTGTGTTGCGTCTTCGCGGAGG 282128
>seq37995
Length=189229
Score = 82.4 bits (90), Expect = 6e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339
||||||||||| | || || || || ||||| |||| ||| || ||||| ||||||
Sbjct 163833 GACAAAGAAGGGATACCTCCTGACCAGCAGAGGCTGATTTTTGCTGGAAAACAGTTGGAA 163892
Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111389
||| | |||| |||| ||||| ||||| || |||||||| ||||| ||
Sbjct 163893 GATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCA 163942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422766082657600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |