Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq50758 116 3e-21 seq51452 100 2e-16 seq50708 89.7 4e-13 seq37995 82.4 6e-11 >seq50758 Length=122349 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| |||||| ||||||| |||||||| || |||| |||| Sbjct 118720 ATGCAGATTTTTGTGAAAACGTTGACCGGGAAAACCATCACTTTGGAGGTGGAAAGTTCT 118779 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | | || ||| || ||| ||||| || || ||||| ||||| Sbjct 118780 GATACTATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAG 118839 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| || | |||||| || |||||||||||| | ||| |||| ||||||||| Sbjct 118840 CAGAGGCTGATCTTTGCGGGGAAGCAATTGGAAGATGGAAGGACTCTGGCTGATTATAAT 118899 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || || || || || | || | ||||| || ||||| Sbjct 118900 ATTCAGAAGGAGTCCACCCTGCACCTTGTCCTCCGTCTCCGTGGTGG 118946 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || || |||||||| | || || || || || ||| | ||| ||| | | Sbjct 118492 ATGCAGATCTTCGTCAAAACACTCACTGGGAAGACTATCACCCTCGAAGTCGAAAGCTCC 118551 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | | || || || ||| ||||| || || | || || || Sbjct 118552 GATACTATTGACAATGTTAAGGCGAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAG 118611 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||| | || | ||| || || || ||||||||| | |||| | || ||||||||| Sbjct 118612 CAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGGAGAACTTTAGCTGATTATAAT 118671 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||| ||||| || || ||| | ||||| || ||||| Sbjct 118672 ATCCAGAAGGAATCCACACTTCACTTGGTGCTCCGTCTTCGTGGTGG 118718 >seq51452 Length=252770 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||||||||| || ||||| | ||||| ||||| || || ||||| || | Sbjct 59127 AATGCAAATTTTCGTTAAAACATTAACCGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 59068 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| || ||| | || || |||||| || || ||||| |||| || || Sbjct 59067 GGATACTATTGATAATGTTAAGACGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 59008 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||||| || |||| ||| || || |||||||||||| ||| |||| |||||||| Sbjct 59007 ACAAAGACTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 58948 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| ||||| || || ||||| || |||| | || || || ||||| Sbjct 58947 TATTCAAAAGGAGTCAACACTCCACCTAGTCCTCCGCCTTCGTGGTGG 58900 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| ||||| || || | || || ||||| || || ||||| || | Sbjct 58443 AATGCAAATCTTTGTTAAGACCTTAACTGGGAAAACAATCACATTGGAAGTTGAGAGCTC 58384 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || | ||| | | || || ||||||| ||||| |||||| | || ||||| Sbjct 58383 GGACACGATTGACAATGTTAAGGCAAAAATTCAAGACAAGGAAGGCATCCCACCGGATCA 58324 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||||||| || | ||| || || |||||||||||| | ||| | || || ||||| Sbjct 58323 GCAAAGGCTGATATTTGCAGGAAAGCAATTGGAAGATGGGAGGACTCTTGCTGACTATAA 58264 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || ||||| || |||| | || || || ||||| Sbjct 58263 CATTCAAAAGGAGTCAACACTCCACCTAGTCCTTCGCCTTCGTGGTGG 58216 >seq50708 Length=321788 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 111263 TAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATG 111322 ||||||||| | || ||||| ||||| |||| |||||||||||| | |||| || Sbjct 282277 TAAAACAAAGA-TTCAAGACAAGGAAGGAATTCCTCCGGATCAACAAAGGTTGATTTTTG 282219 Query 111323 CGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTA 111382 | || |||||| | || ||| ||| | || |||||||| || || || ||||| | Sbjct 282218 CTGGAAAACAACTCGAGGATGGGCGAACACTTGCTGATTATAACATTCAGAAGGAATCCA 282159 Query 111383 CACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | || ||| | ||||||||||| ||||| || Sbjct 282158 CTCTCCATCTTGTGTTGCGTCTTCGCGGAGG 282128 >seq37995 Length=189229 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 ||||||||||| | || || || || ||||| |||| ||| || ||||| |||||| Sbjct 163833 GACAAAGAAGGGATACCTCCTGACCAGCAGAGGCTGATTTTTGCTGGAAAACAGTTGGAA 163892 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111389 ||| | |||| |||| ||||| ||||| || |||||||| ||||| || Sbjct 163893 GATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCA 163942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422766082657600