Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6080 91.5 3e-13 seq26518 89.7 1e-12 seq51668 87.8 4e-12 seq50896 87.8 4e-12 seq47994 87.8 4e-12 seq37707 87.8 4e-12 seq30309 87.8 4e-12 seq28524 87.8 4e-12 seq21170 87.8 4e-12 seq13515 87.8 4e-12 seq12540 87.8 4e-12 seq8811 87.8 4e-12 seq7502 87.8 4e-12 seq1825 87.8 4e-12 seq50096 86.0 1e-11 seq48471 86.0 1e-11 seq10553 86.0 1e-11 seq51369 84.2 4e-11 seq3005 84.2 4e-11 >seq6080 Length=176080 Score = 91.5 bits (100), Expect = 3e-13 Identities = 191/283 (67%), Gaps = 4/283 (1%) Strand=Plus/Minus Query 218528 ACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGG 218587 |||| ||||| ||||| || || | |||| | | | |||||||| || | | Sbjct 156822 ACAAAGAGCTTATTCTGTTTTCAATGGCTGATCTTCAAAGGTCTATTCCATCAATGCTTG 156763 Query 218588 ATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTTC 218647 |||| | || || || | ||||| || || || || ||| ||||| | ||| Sbjct 156762 ATGGTTTGAAACCGGGTCAAAGGAAGATTCTGTTCTGTGCGTTTAAGAGGAACTTTGTTA 156703 Query 218648 AAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACG 218707 | ||| || || | || |||||||||||||| || || || | || || || | Sbjct 156702 AGGAAGCAAAAGTTTCCCAATTTTCTGGTTATGTCTCTGAGCACTCAGCTTATCACCATG 156643 Query 218708 GTGAGCAGAGTCT--GCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAA 218765 ||||||||||||| |||| |||| | |||||||||||||||||||| ||||| || Sbjct 156642 GTGAGCAGAGTCTTAGCAGCA--CCATCATTGGCATGGCACAGGACTATGTTGGCAGCAA 156585 Query 218766 CAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 || | || | ||| || || ||||| ||||| ||||| Sbjct 156584 TAATGTAAATCTTTTGCAACCAAATGGTCAATTTGGCACTCGT 156542 >seq26518 Length=146681 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 19883 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 19824 Query 142562 GCCCCAC 142568 ||||||| Sbjct 19823 GCCCCAC 19817 >seq51668 Length=32080 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2994 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2935 Query 142563 CCCCAC 142568 |||||| Sbjct 2934 CCCCAC 2929 >seq50896 Length=231056 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 96729 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 96788 Query 142563 CCCCAC 142568 |||||| Sbjct 96789 CCCCAC 96794 >seq47994 Length=55818 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 22882 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 22941 Query 142563 CCCCAC 142568 |||||| Sbjct 22942 CCCCAC 22947 >seq37707 Length=229962 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 193021 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 193080 Query 142563 CCCCAC 142568 |||||| Sbjct 193081 CCCCAC 193086 >seq30309 Length=99388 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 93863 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 93804 Query 142563 CCCCAC 142568 |||||| Sbjct 93803 CCCCAC 93798 >seq28524 Length=98559 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 92085 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 92026 Query 142563 CCCCAC 142568 |||||| Sbjct 92025 CCCCAC 92020 >seq21170 Length=85678 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 27701 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 27760 Query 142563 CCCCAC 142568 |||||| Sbjct 27761 CCCCAC 27766 >seq13515 Length=169911 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 20383 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 20442 Query 142563 CCCCAC 142568 |||||| Sbjct 20443 CCCCAC 20448 >seq12540 Length=123066 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 34627 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 34568 Query 142563 CCCCAC 142568 |||||| Sbjct 34567 CCCCAC 34562 >seq8811 Length=181991 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 138786 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 138845 Query 142563 CCCCAC 142568 |||||| Sbjct 138846 CCCCAC 138851 >seq7502 Length=197050 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 162620 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 162561 Query 142563 CCCCAC 142568 |||||| Sbjct 162560 CCCCAC 162555 >seq1825 Length=197613 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 127593 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 127652 Query 142563 CCCCAC 142568 |||||| Sbjct 127653 CCCCAC 127658 >seq50096 Length=53107 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 8558 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8617 Query 142564 CCCAC 142568 ||||| Sbjct 8618 CCCAC 8622 >seq48471 Length=178333 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 138629 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 138570 Query 142564 CCCAC 142568 ||||| Sbjct 138569 CCCAC 138565 >seq10553 Length=209583 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||| ||||||||| Sbjct 104099 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCATGGGTTCGA 104040 Query 142562 GCCCCAC 142568 ||||||| Sbjct 104039 GCCCCAC 104033 >seq51369 Length=28725 Score = 84.2 bits (92), Expect = 4e-11 Identities = 60/68 (88%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGT--TCG 142560 |||||| ||||||||| |||||||||| || |||||||||| |||||||||||| ||| Sbjct 3110 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAATCTTGTGGTCGTGGGTTCTCG 3169 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 3170 AGCCCCAC 3177 >seq3005 Length=25992 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| ||||||| || || ||||||| || ||||||||||||||||| Sbjct 9278 AGCCCGTCTAGCTCAGTTGGTAGAGAGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 9219 Query 142563 CCCCAC 142568 |||||| Sbjct 9218 CCCCAC 9213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027137148920648