Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq6080 91.5 3e-13
seq26518 89.7 1e-12
seq51668 87.8 4e-12
seq50896 87.8 4e-12
seq47994 87.8 4e-12
seq37707 87.8 4e-12
seq30309 87.8 4e-12
seq28524 87.8 4e-12
seq21170 87.8 4e-12
seq13515 87.8 4e-12
seq12540 87.8 4e-12
seq8811 87.8 4e-12
seq7502 87.8 4e-12
seq1825 87.8 4e-12
seq50096 86.0 1e-11
seq48471 86.0 1e-11
seq10553 86.0 1e-11
seq51369 84.2 4e-11
seq3005 84.2 4e-11
>seq6080
Length=176080
Score = 91.5 bits (100), Expect = 3e-13
Identities = 191/283 (67%), Gaps = 4/283 (1%)
Strand=Plus/Minus
Query 218528 ACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGG 218587
|||| ||||| ||||| || || | |||| | | | |||||||| || | |
Sbjct 156822 ACAAAGAGCTTATTCTGTTTTCAATGGCTGATCTTCAAAGGTCTATTCCATCAATGCTTG 156763
Query 218588 ATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTTC 218647
|||| | || || || | ||||| || || || || ||| ||||| | |||
Sbjct 156762 ATGGTTTGAAACCGGGTCAAAGGAAGATTCTGTTCTGTGCGTTTAAGAGGAACTTTGTTA 156703
Query 218648 AAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACG 218707
| ||| || || | || |||||||||||||| || || || | || || || |
Sbjct 156702 AGGAAGCAAAAGTTTCCCAATTTTCTGGTTATGTCTCTGAGCACTCAGCTTATCACCATG 156643
Query 218708 GTGAGCAGAGTCT--GCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAA 218765
||||||||||||| |||| |||| | |||||||||||||||||||| ||||| ||
Sbjct 156642 GTGAGCAGAGTCTTAGCAGCA--CCATCATTGGCATGGCACAGGACTATGTTGGCAGCAA 156585
Query 218766 CAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808
|| | || | ||| || || ||||| ||||| |||||
Sbjct 156584 TAATGTAAATCTTTTGCAACCAAATGGTCAATTTGGCACTCGT 156542
>seq26518
Length=146681
Score = 89.7 bits (98), Expect = 1e-12
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||
Sbjct 19883 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 19824
Query 142562 GCCCCAC 142568
|||||||
Sbjct 19823 GCCCCAC 19817
>seq51668
Length=32080
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 2994 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2935
Query 142563 CCCCAC 142568
||||||
Sbjct 2934 CCCCAC 2929
>seq50896
Length=231056
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 96729 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 96788
Query 142563 CCCCAC 142568
||||||
Sbjct 96789 CCCCAC 96794
>seq47994
Length=55818
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 22882 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 22941
Query 142563 CCCCAC 142568
||||||
Sbjct 22942 CCCCAC 22947
>seq37707
Length=229962
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 193021 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 193080
Query 142563 CCCCAC 142568
||||||
Sbjct 193081 CCCCAC 193086
>seq30309
Length=99388
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 93863 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 93804
Query 142563 CCCCAC 142568
||||||
Sbjct 93803 CCCCAC 93798
>seq28524
Length=98559
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 92085 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 92026
Query 142563 CCCCAC 142568
||||||
Sbjct 92025 CCCCAC 92020
>seq21170
Length=85678
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 27701 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 27760
Query 142563 CCCCAC 142568
||||||
Sbjct 27761 CCCCAC 27766
>seq13515
Length=169911
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 20383 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 20442
Query 142563 CCCCAC 142568
||||||
Sbjct 20443 CCCCAC 20448
>seq12540
Length=123066
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 34627 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 34568
Query 142563 CCCCAC 142568
||||||
Sbjct 34567 CCCCAC 34562
>seq8811
Length=181991
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 138786 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 138845
Query 142563 CCCCAC 142568
||||||
Sbjct 138846 CCCCAC 138851
>seq7502
Length=197050
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 162620 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 162561
Query 142563 CCCCAC 142568
||||||
Sbjct 162560 CCCCAC 162555
>seq1825
Length=197613
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 127593 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 127652
Query 142563 CCCCAC 142568
||||||
Sbjct 127653 CCCCAC 127658
>seq50096
Length=53107
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 8558 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8617
Query 142564 CCCAC 142568
|||||
Sbjct 8618 CCCAC 8622
>seq48471
Length=178333
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 138629 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 138570
Query 142564 CCCAC 142568
|||||
Sbjct 138569 CCCAC 138565
>seq10553
Length=209583
Score = 86.0 bits (94), Expect = 1e-11
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
||||||| ||||||||| |||||||||| || ||||||| || |||||| |||||||||
Sbjct 104099 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCATGGGTTCGA 104040
Query 142562 GCCCCAC 142568
|||||||
Sbjct 104039 GCCCCAC 104033
>seq51369
Length=28725
Score = 84.2 bits (92), Expect = 4e-11
Identities = 60/68 (88%), Gaps = 2/68 (3%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGT--TCG 142560
|||||| ||||||||| |||||||||| || |||||||||| |||||||||||| |||
Sbjct 3110 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAATCTTGTGGTCGTGGGTTCTCG 3169
Query 142561 AGCCCCAC 142568
||||||||
Sbjct 3170 AGCCCCAC 3177
>seq3005
Length=25992
Score = 84.2 bits (92), Expect = 4e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| ||||||| || || ||||||| || |||||||||||||||||
Sbjct 9278 AGCCCGTCTAGCTCAGTTGGTAGAGAGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 9219
Query 142563 CCCCAC 142568
||||||
Sbjct 9218 CCCCAC 9213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027137148920648
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |