Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq51452 122 6e-23 seq19192 122 6e-23 seq50758 96.9 2e-15 seq37995 82.4 5e-11 >seq51452 Length=252770 Score = 122 bits (134), Expect = 6e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| ||||||| |||||||| |||||||| || | ||| || | | Sbjct 4066 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 4007 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||| | | | || | ||| ||| ||| ||||| ||||| | || | |||| Sbjct 4006 AGACACGATTGACAATGTGAAGGCAAAGATTCAGGATAAGGAGGGCATTCCACCAGACCA 3947 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| |||||||||||||| || || | || ||| | || | || |||||||| Sbjct 3946 GCAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCTGATTACAA 3887 Query 22013 TATTCAGAAGGAATCTACTCTTCAT 22037 |||||||||||| |||||||| ||| Sbjct 3886 TATTCAGAAGGAGTCTACTCTCCAT 3862 Score = 109 bits (120), Expect = 4e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| ||||||| |||||||| || ||||| || ||||| || | | Sbjct 58215 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAGACCATCACATTGGAAGTTGAGAGCTC 58156 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||| | | | || | ||| || || |||||||| ||| | || |||| Sbjct 58155 AGACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCGCCGGACCA 58096 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || ||||||||||| ||||| | || ||| | || |||| || ||||| Sbjct 58095 GCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTGGCGGACTACAA 58036 Query 22013 TATTCAGAAGGAATCTACTCTTCAT 22037 ||| |||||||| |||||||| ||| Sbjct 58035 TATCCAGAAGGAGTCTACTCTCCAT 58011 Score = 109 bits (120), Expect = 4e-19 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| |||| || ||||| || ||||| || || ||||| || | | Sbjct 58899 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 58840 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAA 21949 || ||| | | | || ||||| |||||| || || |||||| | ||||| | Sbjct 58839 GGACACGATAGACAATGTTAAGTCTAAAATTCAAGACAAGGAGGGTATCCCACCTG---A 58783 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || ||||| | || |||||||| || ||| |||||||| || |||| |||| ||||| Sbjct 58782 TCAGCAGAGGTTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTA 58723 Query 22010 CAATATTCAGAAGGAATCTACTCTTCA 22036 || || ||||||||||| || ||||| Sbjct 58722 TAACATCCAGAAGGAATCAACCCTTCA 58696 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| ||||||| ||||| || ||||||||||| ||||| || | | Sbjct 4522 AATGCAAATCTTTGTTAAAACCTTAACCGGGAAAACCATTACATTGGAAGTTGAGAGCTC 4463 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| ||||| ||||| || ||| | | | |||| Sbjct 4462 GGACACAATTGATAATGTTAAGGCGAAAATCCAAGATAAGGAAGGTATCGCGCCAGACCA 4403 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || || || ||||| || ||| |||||||| || ||| |||| ||||| || Sbjct 4402 GCAGAGGCTGATTTTCGCTGGGAAGCAATTAGAAGATGGAAGAACGCTGGCTGATTATAA 4343 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 || ||||||||||| || ||||| Sbjct 4342 CATCCAGAAGGAATCCACCCTTCA 4319 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || ||||||||||||| || ||||| || || ||||| || | | Sbjct 59127 AATGCAAATTTTCGTTAAAACATTAACCGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 59068 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| |||||| ||||| || ||| | || |||| Sbjct 59067 GGATACTATTGATAATGTTAAGACGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 59008 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| ||||| || |||||||| || ||| | |||||| ||| |||| ||||| || Sbjct 59007 ACAAAGACTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 58948 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 |||||| ||||| || || || || Sbjct 58947 TATTCAAAAGGAGTCAACACTCCA 58924 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| ||||||| || || || ||||| || || ||||| ||| | | Sbjct 4750 AATGCAAATTTTTGTTAAAACCTTGACTGGGAAAACAATCACATTGGAAGTCGAAAGCTC 4691 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || ||| | | || ||||| ||||| ||||| || ||| | || | | || Sbjct 4690 GGACACGATTGATAATGTTAAGGCCAAAATCCAAGATAAGGAAGGTATTCCGCCAGATCA 4631 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | |||||||| || ||||| || || ||| | ||| | || |||||||| Sbjct 4630 ACAACGTTTGATCTTTGCAGGAAAACAGCTCGAGGATGGACGGACTCTCGCTGATTACAA 4571 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 |||||| ||||| || || || || Sbjct 4570 TATTCAAAAGGAGTCAACACTCCA 4547 >seq19192 Length=430667 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| ||||||| ||||||||||| || || ||| | ||| || | || Sbjct 373860 ATGCAGATTTTTGTTAAAACTTTAACGGGCAAGACGATCACCCTTGAAGTTGAGAGCTCA 373801 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||| || || || |||||| | ||| | |||| Sbjct 373800 GATACCATCGACAATGTAAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCAG 373741 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | || |||||||| |||||||| || ||| || || | || ||||||||| Sbjct 373740 CAGAGGTTGATATTTGCTGGGAAACAACTTGAGGATGGAAGGACCCTTGCAGATTACAAT 373681 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| || |||||| |||| | ||| | | ||||| Sbjct 373680 ATTCAGAAGGAATCAACCCTTCATTTGGTGCTTCGTCTCAGGGGAGG 373634 >seq50758 Length=122349 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| |||| || ||||| || ||| | ||| ||| | | Sbjct 118036 ATGCAAATCTTTGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 118095 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||||| || ||| ||||||||||| | || | | || Sbjct 118096 GACACAATTGACAACGTTAAGGCGAAGATTCAGGATAAAGAGGGAATCCCACCAGATCAG 118155 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||||||||| | |||||| || | || |||||||| Sbjct 118156 CAGAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGTACCCTAGCTGATTACAAC 118215 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||| || |||||||| |||| | ||| | || || ||| Sbjct 118216 ATTCAGAAGGAGTCGACTCTTCACTTGGTGCTCCGTCTTCGTGGTGGA 118263 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | |||||| | || || || || || ||| | ||| ||| | | Sbjct 118492 ATGCAGATCTTCGTCAAAACACTCACTGGGAAGACTATCACCCTCGAAGTCGAAAGCTCC 118551 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| || ||| || || |||||| | || | |||| Sbjct 118552 GATACTATTGACAATGTTAAGGCGAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAG 118611 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || || | |||||| | |||| | || ||||| ||| Sbjct 118612 CAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGGAGAACTTTAGCTGATTATAAT 118671 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| || ||||| |||| | ||| | || || || Sbjct 118672 ATCCAGAAGGAATCCACACTTCACTTGGTGCTCCGTCTTCGTGGTGG 118718 >seq37995 Length=189229 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||| || ||||| |||| ||||| || || |||||||| ||||| | ||| Sbjct 163833 GACAAAGAAGGGATACCTCCTGACCAGCAGAGGCTGATTTTTGCTGGAAAACAGTTGGAA 163892 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| |||| |||| ||||||||||| ||||| ||||| || ||||| |||| || Sbjct 163893 GATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCACCTGGTTTTG 163952 Query 22047 CGTTTACGAGGAGGA 22061 | | |||||||| Sbjct 163953 AGGCTCAGAGGAGGA 163967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357892915087312