Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq20296 118 9e-22 seq32633 100 2e-16 seq50758 95.1 1e-14 seq19192 95.1 1e-14 seq3636 95.1 1e-14 seq17618 91.5 1e-13 seq49251 87.8 2e-12 seq51452 86.0 5e-12 seq7668 86.0 5e-12 seq50708 82.4 6e-11 seq50574 82.4 6e-11 seq37995 82.4 6e-11 >seq20296 Length=523354 Score = 118 bits (130), Expect = 9e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GC 114213 ||| ||||| || | | || ||||| | || ||||| || || ||||||||||| || Sbjct 452968 ACCACCACGGAGACGAAGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGC 452909 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | | || || ||| || || ||||| || ||| | ||||| ||||| |||||||| | Sbjct 452908 T-AGGGTTCGGCCATCCTCCAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTG 452850 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 |||||||||| ||||| |||||| || | | || | ||||||| |||||||| Sbjct 452849 GAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGA 452790 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | ||| | || || || || || ||||| || || |||||||| Sbjct 452789 CCTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 452741 >seq32633 Length=132462 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || |||| || | ||| | || ||||| || ||||| ||||| || Sbjct 60883 ATACCACCCCTCAGCCTCAGCACCAGATGCAGAGTGGATTCCTTCTGAATATTGTAGTCA 60942 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||||| ||| |||||||| || ||||| |||| | | ||| || || ||| Sbjct 60943 GCAAGAGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGA 61002 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||||||||| || || || ||| | | |||| || |||| || Sbjct 61003 GGAATGCCTTCTTTATCCTGGATTTTAGCTTTGACATTGTCAATTGTATCGGAACTCTCA 61062 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || |||| |||||||||||| |||||||| Sbjct 61063 ACCTCAAGGGTAATAGTCTTTCCTGTCAAAGTTTTTACAAAGATCTGCAT 61112 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| | | | ||| | || | || || || ||||| |||||||| || Sbjct 61111 ATACCACCACGCAAACGGAGAACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCA 61170 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||| |||||||| || ||||| |||| | | || || |||||| Sbjct 61171 GCAAGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGCTGATCCGGA 61230 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||||||| || | | |||| ||||| | | || Sbjct 61231 GGAATACCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATTGTGTCTGAGCTCTCA 61290 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || || | |||||||||||| |||||||| Sbjct 61291 ACCTCGAGAGTGATAGTCTTCCCAGTTAAAGTTTTTACAAAGATCTGCAT 61340 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || || ||||| || ||||| ||||| | ||| | ||| ||| Sbjct 60448 ACCAAATGGAGGGTGGACTCTTTCTGGATGTTATAATCAGCAAGAGTCCTCCCATCCTCA 60507 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || |||||||| | || | |||||| |||||||| ||||| ||||||||||| Sbjct 60508 AGCTGCTTACCAGCAAAAATTAAACGCTGCTGGTCCGGGGGAATACCTTCTTTGTCTTGG 60567 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 |||||| ||| | | |||| || || | || || |||| || | || || Sbjct 60568 ATCTTTGCTTTCACATTATCAATTGTATCTGAACTCTCAACTTCCAGCGTGATTGTCTTC 60627 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || || ||||| |||||||| Sbjct 60628 CCAGTCAACGTCTTCACAAAGATCTGCAT 60656 >seq50758 Length=122349 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || ||||| || || | | ||| || || | ||||| || || || ||||||||||| Sbjct 118493 ATCCCGCCGCGAAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCA 118434 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||||||||| || || || |||| || | || ||||| || Sbjct 118433 GCGAGGGTTCGGCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGT 118374 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| |||||| || | | |||| ||||||| | ||| Sbjct 118373 GGAATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATTGTGTCGGAGCTTTCC 118314 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| || |||| ||| || |||||||||||||| Sbjct 118313 ACCTCCAAAGTGATGGTTTTCCCAGTCAAAGTCTTCACAAAAATCTGCAT 118264 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 || || ||||| || | | || || || | || || || || |||||||||||||| Sbjct 118265 ATTCCACCACGAAGACGGAGCACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCA 118206 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 ||| | ||||| |||||| | ||||| ||||| |||| | | ||| || || || Sbjct 118205 GCT-AGGGTACGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGG 118147 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 || || || ||||| || |||||| || | | |||| ||||||| | ||| Sbjct 118146 TGGGATTCCCTCTTTATCCTGAATCTTCGCCTTAACGTTGTCAATTGTGTCGGAGCTTTC 118087 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 ||| || | ||| | ||||| ||||| || ||||| ||||| || |||||| || Sbjct 118086 GACTTCAAGGGTGATTGTTTTCCCGGTTAGGGTTTTGACAAAGATTTGCATGCCT 118032 >seq19192 Length=430667 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || ||||| || ||||| |||||||| | || | ||| ||| Sbjct 373652 ACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATCTGCAAGGGTCCTTCCATCCTCA 373711 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 |||||||| ||||| | || | | ||| ||||| |||||||| || || ||||| Sbjct 373712 AGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCCTGG 373771 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 |||||| |||| | || | ||| || | | || || || | ||| | ||| ||| Sbjct 373772 ATCTTTGCCTTTACATTGTCGATGGTATCTGAGCTCTCAACTTCAAGGGTGATCGTCTTG 373831 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | |||||| ||||||||||||||| Sbjct 373832 CCCGTTAAAGTTTTAACAAAAATCTGCATG 373861 >seq3636 Length=134301 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | ||| || ||||||||| || || ||| Sbjct 15595 GTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGCCCATCTTCAAGCTGCTTTCCA 15536 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| || || ||||| |||||||| ||||| ||||| || Sbjct 15535 GCAAAGATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTC 15476 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| | || || || | ||| | || || ||||||| ||| Sbjct 15475 ACATTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTCTTCCCGGTCAATGTT 15416 Query 114366 TTTACAAAAATCTGCAT 114382 ||||||||||||||||| Sbjct 15415 TTTACAAAAATCTGCAT 15399 >seq17618 Length=194525 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | || | ||| | || || || || || |||||||||||| Sbjct 71817 ACCACCACGGAGACGGAGCACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGC 71876 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || |||||||| || || || ||| | || |||||||| || || || || Sbjct 71877 TAGGGTTCGGCCGTCTTCAAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCTGGGGG 71936 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||||| ||| | | || | ||||||| ||||| || Sbjct 71937 AATCCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCGGAAGATTCAAC 71996 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||||| || || || ||||| || || |||||||| Sbjct 71997 CTCAAGGGTGATTGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 72044 >seq49251 Length=53185 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | || | ||| | || ||||| || || |||||||||||| Sbjct 47151 ACCACCACGGAGACGGAGCACGAGATGAAGAGTCGATTCCTTCTGGATGTTGTAATCGGC 47210 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || |||||||| || || || || | || |||||||| || || || || Sbjct 47211 TAGGGTTCGGCCGTCTTCAAGCTGCTTTCCGCCGAAAATCAGACGCTGCTGATCTGGGGG 47270 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||||| ||| | | || | ||||||| ||||| || Sbjct 47271 AATCCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCGGAAGATTCAAC 47330 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||||| || | || ||||| || || |||||||| Sbjct 47331 CTCAAGGGTGATTGTTTTACCCGCTAGGGTTTTCACGAAGATCTGCAT 47378 >seq51452 Length=252770 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| | || | || || || |||||||| |||||||| Sbjct 59125 ATTCCACCACGGAGGCGAAGAACAAGGTGAAGTGTTGACTCCTTTTGAATATTGTAATCT 59184 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||| | ||| || || ||||| || ||| |||| | ||| ||||| || || Sbjct 59185 GCGAGAGTATGCCCATCCTCGAGCTGTTTTCCTGCGAAGATCAAACGTTGTTGATCTGGT 59244 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||||||||| || ||| | |||| | | || | ||||| | || Sbjct 59245 GGAATACCTTCTTTGTCCTGGAT-TTTGGCTTTAACATTGTCGATCGTGTCTGAACTCTC 59303 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || || || ||||| ||||| || || ||||| |||||||| Sbjct 59304 AACTTCGAGAGTTACGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 59354 >seq7668 Length=316181 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||||||| | || || |||| ||| || || || Sbjct 198715 GTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTTAAGCTGCTTTCCG 198656 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || |||||||| || || || ||||| ||||| ||||| ||||| ||| Sbjct 198655 GCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTGTCTTGGATCTTGGATTTC 198596 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| ||||| || || | ||| | ||||| || || || ||| Sbjct 198595 ACATTGTCGATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGTTTTACCCGTTAGGGTT 198536 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 198535 TTCACGAAGATCTGCAT 198519 >seq50708 Length=321788 Score = 82.4 bits (90), Expect = 6e-11 Identities = 121/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || || | ||| || | ||| | || ||||| || |||||||| ||||| Sbjct 282127 ACCTCCGCGAAGACGCAACACAAGATGGAGAGTGGATTCCTTCTGAATGTTATAATCAGC 282186 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || ||| || |||||||| ||||| | || | | ||||| |||||||| Sbjct 282187 AAGTGTTCGCCCATCCTCGAGTTGTTTTCCAGCAAAAATCAACCTTTGTTGATCCGGAGG 282246 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTC 114322 ||| ||||| ||||| |||| ||||||||| | | |||| |||||| Sbjct 282247 AATTCCTTCCTTGTCTTGAATC-TTTGTTTTAACATTGTCAATGGTGTC 282294 >seq50574 Length=377344 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | |||||||| || || |||||||||||| Sbjct 95046 ATCCCACCACGGAGACGGAGGACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCG 95105 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| || ||||| || || || ||| |||| || | || || || || Sbjct 95106 GCGAGAGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGCCTTTGCTGATCTGGG 95165 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| || || ||||| | || | ||||||| ||| Sbjct 95166 GGAATTCCTTCCTTGTCCTGGATTTTGGCTTTTACGTTGTCGATTGTGTCGGAACTCTCG 95225 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || ||||| || ||||| || || |||||||| Sbjct 95226 ACCTCGAGAGTGATGGTCTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 95275 >seq37995 Length=189229 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 || |||||||| | || | || |||||||| || || |||||||| || ||| ||| Sbjct 163957 AGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCAGCCAGAGTTCGA 163898 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||| | ||||| ||||| | || || | ||| ||||| ||||| || |||||| Sbjct 163897 CCATCTTCCAACTGTTTTCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGTATCCCTTCT 163838 Query 114285 TTGTC 114289 ||||| Sbjct 163837 TTGTC 163833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419862364026336