Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq44697 132 9e-26 seq38302 123 5e-23 >seq44697 Length=182102 Score = 132 bits (146), Expect = 9e-26 Identities = 311/461 (67%), Gaps = 15/461 (3%) Strand=Plus/Minus Query 42399 GAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAAT 42458 |||| | |||| ||| || | || ||||| || |||||||| |||||||| || Sbjct 113722 GAAAGGCATTTCATCACTCACGTCCTTGCCTTTTTTGCCGCCTCAGACGGCATCGTTTTA 113663 Query 42459 GAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTT--GAGGCGCGCTGCTT-C 42515 || ||||| ||| |||||||||||||| || || | || ||||| || ||||| | Sbjct 113662 GAAAACCTAGCCGGAAGGTTCATGAAAGAAGTCCA--AGTTGCCGAGGCCCG-TGCTTTC 113606 Query 42516 TACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC-TCAA 42574 ||||||||||| || || || || ||| | ||||| ||| |||| || |||| || | Sbjct 113605 TACGGCTTCCAAATCGCGATTGAAAACATCCACTCCGAGATGTA---CAGTCTGCTTCTA 113549 Query 42575 CA--CGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATG 42632 | |||||||| ||| | | ||| | | | | ||| || | ||||| || Sbjct 113548 GAGTCGTACATCAAGGACTCTGACGAAAAAAGCAGATTATTCCGCGCAGTTGAGACTATC 113489 Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||| | ||||||||||| | ||||| || |||||||| || |||| ||| Sbjct 113488 CCCTGTGTTGAGAAGAAGGCGAAGTGGGCCCTACGTTGGATCGACGGTTCCGA---AACA 113432 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 || | ||| | |||| || ||| | || || || || || ||||| || ||| Sbjct 113431 TTTGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTCTCCGGAAGCTTT 113372 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812 | || |||||| | || || || || ||||| ||| | |||||||||||||| Sbjct 113371 TGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACCTTCTCGAACGAG 113312 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTG 42853 | || |||||||| || |||| | || ||||| || Sbjct 113311 TTAATTTCTAGGGACGAAGGTTTGCACTGTGATTTTGCTTG 113271 >seq38302 Length=59671 Score = 123 bits (136), Expect = 5e-23 Identities = 300/446 (67%), Gaps = 15/446 (3%) Strand=Plus/Minus Query 42399 GAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAAT 42458 |||| | |||| ||| || | || ||||| || |||||||| |||||||| || Sbjct 23542 GAAAGGCATTTCATCACTCACGTCCTTGCCTTTTTTGCCGCCTCAGACGGCATCGTTTTA 23483 Query 42459 GAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTT--GAGGCGCGCTGCTT-C 42515 || ||||| ||| |||||||||||||| || || | || ||||| || ||||| | Sbjct 23482 GAAAACCTAGCCGGGAGGTTCATGAAAGAAGTCCA--AGTTGCCGAGGCCCG-TGCTTTC 23426 Query 42516 TACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC-TCAA 42574 ||||||||||| || || || || ||| | ||||| ||| |||| || |||| || | Sbjct 23425 TACGGCTTCCAAATCGCGATTGAAAACATCCACTCCGAGATGTA---CAGTCTGCTTCTA 23369 Query 42575 CA--CGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATG 42632 | |||||||| ||| | | ||| | | | | ||| || | ||||| || Sbjct 23368 GAGTCGTACATCAAGGACTCTGACGAAAAAAGCAGATTATTCCGCGCAGTTGAGACTATT 23309 Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||| | ||||||||||| | ||||| || |||||||| || |||| ||| Sbjct 23308 CCCTGTGTTGAGAAGAAGGCGAAGTGGGCCCTACGTTGGATCGACGGTTCCGA---AACA 23252 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 || | ||| | |||| || ||| | || || || || || ||||| || ||| Sbjct 23251 TTTGCGGAGCGTTTGGTTGCATTTTCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTT 23192 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812 | || |||||| | || || || || ||||| ||| | || ||||||||||| Sbjct 23191 TGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACTTTCTCGAACGAG 23132 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCA 42838 | || |||||||| || |||| Sbjct 23131 TTAATTTCAAGGGACGAAGGTTTGCA 23106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943712064337280