Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq44697 132 9e-26
seq38302 123 5e-23
>seq44697
Length=182102
Score = 132 bits (146), Expect = 9e-26
Identities = 311/461 (67%), Gaps = 15/461 (3%)
Strand=Plus/Minus
Query 42399 GAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAAT 42458
|||| | |||| ||| || | || ||||| || |||||||| |||||||| ||
Sbjct 113722 GAAAGGCATTTCATCACTCACGTCCTTGCCTTTTTTGCCGCCTCAGACGGCATCGTTTTA 113663
Query 42459 GAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTT--GAGGCGCGCTGCTT-C 42515
|| ||||| ||| |||||||||||||| || || | || ||||| || ||||| |
Sbjct 113662 GAAAACCTAGCCGGAAGGTTCATGAAAGAAGTCCA--AGTTGCCGAGGCCCG-TGCTTTC 113606
Query 42516 TACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC-TCAA 42574
||||||||||| || || || || ||| | ||||| ||| |||| || |||| || |
Sbjct 113605 TACGGCTTCCAAATCGCGATTGAAAACATCCACTCCGAGATGTA---CAGTCTGCTTCTA 113549
Query 42575 CA--CGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATG 42632
| |||||||| ||| | | ||| | | | | ||| || | ||||| ||
Sbjct 113548 GAGTCGTACATCAAGGACTCTGACGAAAAAAGCAGATTATTCCGCGCAGTTGAGACTATC 113489
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692
||||| | ||||||||||| | ||||| || |||||||| || |||| |||
Sbjct 113488 CCCTGTGTTGAGAAGAAGGCGAAGTGGGCCCTACGTTGGATCGACGGTTCCGA---AACA 113432
Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752
|| | ||| | |||| || ||| | || || || || || ||||| || |||
Sbjct 113431 TTTGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTCTCCGGAAGCTTT 113372
Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812
| || |||||| | || || || || ||||| ||| | ||||||||||||||
Sbjct 113371 TGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACCTTCTCGAACGAG 113312
Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTG 42853
| || |||||||| || |||| | || ||||| ||
Sbjct 113311 TTAATTTCTAGGGACGAAGGTTTGCACTGTGATTTTGCTTG 113271
>seq38302
Length=59671
Score = 123 bits (136), Expect = 5e-23
Identities = 300/446 (67%), Gaps = 15/446 (3%)
Strand=Plus/Minus
Query 42399 GAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAAT 42458
|||| | |||| ||| || | || ||||| || |||||||| |||||||| ||
Sbjct 23542 GAAAGGCATTTCATCACTCACGTCCTTGCCTTTTTTGCCGCCTCAGACGGCATCGTTTTA 23483
Query 42459 GAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTT--GAGGCGCGCTGCTT-C 42515
|| ||||| ||| |||||||||||||| || || | || ||||| || ||||| |
Sbjct 23482 GAAAACCTAGCCGGGAGGTTCATGAAAGAAGTCCA--AGTTGCCGAGGCCCG-TGCTTTC 23426
Query 42516 TACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC-TCAA 42574
||||||||||| || || || || ||| | ||||| ||| |||| || |||| || |
Sbjct 23425 TACGGCTTCCAAATCGCGATTGAAAACATCCACTCCGAGATGTA---CAGTCTGCTTCTA 23369
Query 42575 CA--CGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATG 42632
| |||||||| ||| | | ||| | | | | ||| || | ||||| ||
Sbjct 23368 GAGTCGTACATCAAGGACTCTGACGAAAAAAGCAGATTATTCCGCGCAGTTGAGACTATT 23309
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692
||||| | ||||||||||| | ||||| || |||||||| || |||| |||
Sbjct 23308 CCCTGTGTTGAGAAGAAGGCGAAGTGGGCCCTACGTTGGATCGACGGTTCCGA---AACA 23252
Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752
|| | ||| | |||| || ||| | || || || || || ||||| || |||
Sbjct 23251 TTTGCGGAGCGTTTGGTTGCATTTTCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTT 23192
Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812
| || |||||| | || || || || ||||| ||| | || |||||||||||
Sbjct 23191 TGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACTTTCTCGAACGAG 23132
Query 42813 CTCATCAGCAGGGACGAGGGGCTGCA 42838
| || |||||||| || ||||
Sbjct 23131 TTAATTTCAAGGGACGAAGGTTTGCA 23106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 943712064337280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |