Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq51452 98.7 8e-16
seq19192 93.3 3e-14
seq50574 91.5 1e-13
seq50758 89.7 4e-13
>seq51452
Length=252770
Score = 98.7 bits (108), Expect = 8e-16
Identities = 169/238 (71%), Gaps = 12/238 (5%)
Strand=Plus/Plus
Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956
||| || || ||||||| |||||| ||||| || || |||||||||||| ||||||||
Sbjct 3835 GAATCCACCCCTCAGCCTCAGCACAAGATGGAGAGTAGACTCCTTCTGAATATTGTAATC 3894
Query 33957 TGCCAATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014
| ||| |||| || | || ||||| ||||| || ||||| || || | |||||| ||
Sbjct 3895 AG-CAAGTGTC-CTACCATCCTCCAACTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCT 3952
Query 34015 ACCGGCACGCTCTCTTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTA 34071
|| | || ||| || ||| ||| ||| ||| | || | || | || | |
Sbjct 3953 GGTGGAATGCCCTCCTTATCCTGAATCTTTGCCTTCACATTGTCAATC---GTGTCTG-A 4008
Query 34072 GAT-TCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128
| | || ||| | || || |||||||| |||| ||||| |||||||||||||||
Sbjct 4009 GCTCTCAACTTCTAATGTGATGGTTTTTCCCGTTAAGGTTTTAACAAAGATTTGCATT 4066
>seq19192
Length=430667
Score = 93.3 bits (102), Expect = 3e-14
Identities = 91/115 (79%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
|||||| |||| |||| |||||||||||| || ||||||||| ||||| ||||| |
Sbjct 373405 ACCTCCCCTCAAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTATGTTATAATCAG- 373463
Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013
||| |||| | | || || | |||||| || ||||||||||| |||||||| ||
Sbjct 373464 CAAGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAGTCGCTGCTGGTC 373518
>seq50574
Length=377344
Score = 91.5 bits (100), Expect = 1e-13
Identities = 90/114 (79%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| ||||||| |||||||| ||| || ||| |||||||||||||||||| || | |
Sbjct 94593 CCTCCCCTCAGCCTCAGCACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCG-C 94651
Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013
|| || || | || ||||| ||||| || |||||||| || | |||||| ||
Sbjct 94652 AAGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAATATTAGCCTCTGCTGGTC 94705
>seq50758
Length=122349
Score = 89.7 bits (98), Expect = 4e-13
Identities = 163/235 (69%), Gaps = 8/235 (3%)
Strand=Plus/Minus
Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956
|||||| || | || || || || || || || ||| |||||||||||| || |||||
Sbjct 118950 GAAACCACCACGGAGACGGAGGACAAGGTGCAGGGTGGACTCCTTCTGAATATTATAATC 118891
Query 33957 TGCCAATTGTCGCTCG-TCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCA 34015
|||| ||| || || ||||||||||| || ||||| ||||| | ||||||||||
Sbjct 118890 AGCCAGA-GTCCTTCCATCTTCCAATTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCCG 118832
Query 34016 CCGGCACGCTCTCTTTGTCCATAATTTT---TTGCTTAATGGAACTCACACTATCAGTAG 34072
|| | | ||| |||||| ||| || || | | || | | | |||||| |
Sbjct 118831 GGGGAATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCA---ATAGTATCAGAAC 118775
Query 34073 ATTCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
||| || | || || ||||| ||||| | ||||||||||| || |||||
Sbjct 118774 TTTCCACCTCCAAAGTGATGGTTTTCCCGGTCAACGTTTTCACAAAAATCTGCAT 118720
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396805303088656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |