Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq51452 98.7 8e-16 seq19192 93.3 3e-14 seq50574 91.5 1e-13 seq50758 89.7 4e-13 >seq51452 Length=252770 Score = 98.7 bits (108), Expect = 8e-16 Identities = 169/238 (71%), Gaps = 12/238 (5%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| || || ||||||| |||||| ||||| || || |||||||||||| |||||||| Sbjct 3835 GAATCCACCCCTCAGCCTCAGCACAAGATGGAGAGTAGACTCCTTCTGAATATTGTAATC 3894 Query 33957 TGCCAATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | ||| |||| || | || ||||| ||||| || ||||| || || | |||||| || Sbjct 3895 AG-CAAGTGTC-CTACCATCCTCCAACTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCT 3952 Query 34015 ACCGGCACGCTCTCTTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTA 34071 || | || ||| || ||| ||| ||| ||| | || | || | || | | Sbjct 3953 GGTGGAATGCCCTCCTTATCCTGAATCTTTGCCTTCACATTGTCAATC---GTGTCTG-A 4008 Query 34072 GAT-TCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 | | || ||| | || || |||||||| |||| ||||| ||||||||||||||| Sbjct 4009 GCTCTCAACTTCTAATGTGATGGTTTTTCCCGTTAAGGTTTTAACAAAGATTTGCATT 4066 >seq19192 Length=430667 Score = 93.3 bits (102), Expect = 3e-14 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| |||| |||| |||||||||||| || ||||||||| ||||| ||||| | Sbjct 373405 ACCTCCCCTCAAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTATGTTATAATCAG- 373463 Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| |||| | | || || | |||||| || ||||||||||| |||||||| || Sbjct 373464 CAAGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAGTCGCTGCTGGTC 373518 >seq50574 Length=377344 Score = 91.5 bits (100), Expect = 1e-13 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||| |||||||| ||| || ||| |||||||||||||||||| || | | Sbjct 94593 CCTCCCCTCAGCCTCAGCACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCG-C 94651 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || | || ||||| ||||| || |||||||| || | |||||| || Sbjct 94652 AAGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAATATTAGCCTCTGCTGGTC 94705 >seq50758 Length=122349 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 |||||| || | || || || || || || || ||| |||||||||||| || ||||| Sbjct 118950 GAAACCACCACGGAGACGGAGGACAAGGTGCAGGGTGGACTCCTTCTGAATATTATAATC 118891 Query 33957 TGCCAATTGTCGCTCG-TCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCA 34015 |||| ||| || || ||||||||||| || ||||| ||||| | |||||||||| Sbjct 118890 AGCCAGA-GTCCTTCCATCTTCCAATTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCCG 118832 Query 34016 CCGGCACGCTCTCTTTGTCCATAATTTT---TTGCTTAATGGAACTCACACTATCAGTAG 34072 || | | ||| |||||| ||| || || | | || | | | |||||| | Sbjct 118831 GGGGAATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCA---ATAGTATCAGAAC 118775 Query 34073 ATTCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| || | || || ||||| ||||| | ||||||||||| || ||||| Sbjct 118774 TTTCCACCTCCAAAGTGATGGTTTTCCCGGTCAACGTTTTCACAAAAATCTGCAT 118720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396805303088656