Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq33627 107 2e-18
seq32633 107 2e-18
seq51452 105 7e-18
seq50758 93.3 4e-14
seq19192 86.0 6e-12
seq3636 84.2 2e-11
>seq33627
Length=115891
Score = 107 bits (118), Expect = 2e-18
Identities = 164/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || | ||||||||| || ||||| | | | |||||| || ||||| |||||
Sbjct 50654 CCTCCCCTCAAACGCAAGACCAAATGGAGAGTCGCCTCCTTCTGGATGTTATAGTCCGCA 50595
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| | |||||| ||||||||||| | | |||| | |||||| ||||| || ||
Sbjct 50594 AGAGTCCTGCCGTCCTCCAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGCGGG 50535
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565
||||| || ||||| ||| | |||| ||| |||| || | ||| || | ||| |
Sbjct 50534 ATACCCTCCTTGTC-TTGAATCTTTGCTTTGACATTG-TCAATGGTATCAGAACTCTCAA 50477
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|||| | || | || || ||||||| ||| || |||||||| ||||||
Sbjct 50476 CCTCCAAAGTTATTGTCTTCCCAGTCAAAGTCTTGACAAAAATATGCATG 50427
>seq32633
Length=132462
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||||||| | ||| | || | | | ||||||||||| |||||||||||
Sbjct 61114 CCACCACGCAAACGGAGAACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCA 61173
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| ||||| ||||| || || | | |||| | | || || ||||||||
Sbjct 61174 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGCTGATCCGGAGGA 61233
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566
|||||||| ||||| ||| | |||| |||| | || | ||||| | ||| ||
Sbjct 61234 ATACCTTCCTTGTC-CTGAATCTTTGCCTTAACATTATCAATTGTGTCTGAGCTCTCAAC 61292
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||| || | || || ||||| | |||||||||||| ||||||||
Sbjct 61293 CTCGAGAGTGATAGTCTTCCCAGTTAAAGTTTTTACAAAGATCTGCAT 61340
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| ||||| ||||| |||||||| | |||||| ||||| ||||| || || | |
Sbjct 60919 GATTCCTTCTGAATATTGTAGTCAGCAAGAGTACGACCATCCTCAAGTTGCTTTCCAGCA 60978
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| | | ||| || || ||||| || |||||||| || |||||| ||| | |
Sbjct 60979 AAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTATCCTGGATTTTAGCTTTGACA 61038
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
|||| | | || |||| ||| ||||| | || | || || || |||| ||||||
Sbjct 61039 TTGT-CAATTGTATCGGAACTCTCAACCTCAAGGGTAATAGTCTTTCCTGTCAAAGTTTT 61097
Query 138600 TACAAAAATCTGCAT 138614
|||||| ||||||||
Sbjct 61098 TACAAAGATCTGCAT 61112
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || | ||| || | || ||||| | | | ||||| || || ||||| || ||
Sbjct 60430 CCTCCCCTCAACCGGAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTATAATCAGCA 60489
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| | | ||||| || || ||||| | | | |||| |||||| |||||||| ||
Sbjct 60490 AGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATTAAACGCTGCTGGTCCGGGGGA 60549
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|||||||||||||| ||| ||| ||| | | || | || || | ||| ||
Sbjct 60550 ATACCTTCTTTGTCTTGGATCTTTGCTTTCACATTATCAATTGTATCTGAACTCTCAACT 60609
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | ||| | || || ||||||| || || ||||| ||||||||
Sbjct 60610 TCCAGCGTGATTGTCTTCCCAGTCAACGTCTTCACAAAGATCTGCAT 60656
>seq51452
Length=252770
Score = 105 bits (116), Expect = 7e-18
Identities = 143/197 (73%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||||||||||||||| ||||| || | |||| || |||||||| ||||| || |
Sbjct 59159 TTGACTCCTTTTGAATATTGTAATCTGCGAGAGTATGCCCATCCTCGAGCTGTTTTCCTG 59218
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538
|||| | ||| ||||| || || || |||||||||||||| |||||| ||| |
Sbjct 59219 CGAAGATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTGGCTTTAA 59278
Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597
|||| || | ||||| | ||| || |||| || | || || |||||||| ||
Sbjct 59279 CATTG-TCGATCGTGTCTGAACTCTCAACTTCGAGAGTTACGGTCTTGCCAGTCAGGGTC 59337
Query 138598 TTTACAAAAATCTGCAT 138614
|| ||||| ||||||||
Sbjct 59338 TTCACAAAGATCTGCAT 59354
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/196 (69%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||||||||||||||| ||||| || | ||| || |||||||| ||||| || |
Sbjct 4554 TTGACTCCTTTTGAATATTGTAATCAGCGAGAGTCCGTCCATCCTCGAGCTGTTTTCCTG 4613
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538
| |||| | ||| ||||| || || || |||||||| || || |||||| || |
Sbjct 4614 CAAAGATCAAACGTTGTTGATCTGGCGGAATACCTTCCTTATCTTGGATTTTGGCCTTAA 4673
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
| || | ||||| | || || || | || | ||||| ||||||| ||||
Sbjct 4674 CATTATCAATCGTGTCCGAGCTTTCGACTTCCAATGTGATTGTTTTCCCAGTCAAGGTTT 4733
Query 138599 TTACAAAAATCTGCAT 138614
| |||||||| |||||
Sbjct 4734 TAACAAAAATTTGCAT 4749
Score = 82.4 bits (90), Expect = 8e-11
Identities = 139/198 (70%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||||||||||||||| || || || | ||||||| || || ||||| || || |
Sbjct 4782 TTGACTCCTTTTGAATATTATAATCTGCGAGAGTACGCCCATCTTCCAGTTGCTTCCCTG 4841
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538
| | || || | ||| || ||||| || ||||| || ||||| || |||| | |||
Sbjct 4842 CAAATATCAGCCTCTGCTGATCCGGTGGGATACCCTCCTTGTC-TTGTATTTTCGCCTTA 4900
Query 138539 --ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596
|||| || | |||||| | || || || | || | ||||| ||||| || ||
Sbjct 4901 ACATTG-TCTATGGTGTCCGAGCTTTCAACTTCCAGTGTGATGGTTTTTCCAGTTAGGGT 4959
Query 138597 TTTTACAAAAATCTGCAT 138614
||| ||||| ||||||||
Sbjct 4960 TTTAACAAAGATCTGCAT 4977
>seq50758
Length=122349
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | ||| || || | | | |||||||| || |||||||| ||
Sbjct 118490 CCGCCGCGAAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCG 118431
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||| || ||||| || |||| | |||| || | || ||||| || ||
Sbjct 118430 AGGGTTCGGCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGTGGA 118371
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
||||| || ||||| ||| | || | || | |||| | | ||||||| ||||
Sbjct 118370 ATACCCTCCTTGTCC-TGAATCTTAGCCTTGACGTTGT-CAATTGTGTCGGAGCTTTCCA 118313
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | ||||| ||||||| ||| || ||||||||||||||
Sbjct 118312 CCTCCAAAGTGATGGTTTTCCCAGTCAAAGTCTTCACAAAAATCTGCAT 118264
>seq19192
Length=430667
Score = 86.0 bits (94), Expect = 6e-12
Identities = 138/196 (70%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||||||||| ||||| || | ||| || || || || || || || | |
Sbjct 373895 GACTCCTTTTGAATATTGTAATCAGCAAGAGTTCGGCCATCTTCAAGCTGCTTTCCAGCA 373954
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539
|||| || | ||| ||||| ||||| || ||||| ||||| ||| |||| | || |
Sbjct 373955 AAGATCAGCCTCTGCTGGTCTGGAGGAATCCCTTCCTTGTC-TTGAATTTTCGCCTTCAC 374013
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
| || | ||||| | ||| ||||| | || | ||||| ||||| ||||||||
Sbjct 374014 GTTATCAATTGTGTCTGAACTCTCGACCTCAAGAGTAATGGTTTTGCCAGTAAGAGTTTT 374073
Query 138600 TACAAAAATCTGCATG 138615
||||| |||||||||
Sbjct 374074 AACAAATATCTGCATG 374089
>seq3636
Length=134301
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||| | || | || | | | |||||||| || |||||||||||
Sbjct 15625 CCACCACGCAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 15566
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| ||| || || || || || || | | |||| | | ||| || || |||||
Sbjct 15565 AGAGTGCGCCCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGG 15506
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| ||||| ||| || || | ||||| | | |||||||| ||| ||
Sbjct 15505 ATGCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGT-CAATGGTGTCGGAGCTCTCAAC 15447
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || || |||| ||||||||||||||||||||
Sbjct 15446 CTCAAGGGTGATGGTCTTCCCGGTCAATGTTTTTACAAAAATCTGCAT 15399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495932832140160
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