Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq33627 107 2e-18 seq32633 107 2e-18 seq51452 105 7e-18 seq50758 93.3 4e-14 seq19192 86.0 6e-12 seq3636 84.2 2e-11 >seq33627 Length=115891 Score = 107 bits (118), Expect = 2e-18 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | ||||||||| || ||||| | | | |||||| || ||||| ||||| Sbjct 50654 CCTCCCCTCAAACGCAAGACCAAATGGAGAGTCGCCTCCTTCTGGATGTTATAGTCCGCA 50595 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | |||||| ||||||||||| | | |||| | |||||| ||||| || || Sbjct 50594 AGAGTCCTGCCGTCCTCCAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGCGGG 50535 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | |||| ||| |||| || | ||| || | ||| | Sbjct 50534 ATACCCTCCTTGTC-TTGAATCTTTGCTTTGACATTG-TCAATGGTATCAGAACTCTCAA 50477 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | || || ||||||| ||| || |||||||| |||||| Sbjct 50476 CCTCCAAAGTTATTGTCTTCCCAGTCAAAGTCTTGACAAAAATATGCATG 50427 >seq32633 Length=132462 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||||||| | ||| | || | | | ||||||||||| ||||||||||| Sbjct 61114 CCACCACGCAAACGGAGAACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCA 61173 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| ||||| || || | | |||| | | || || |||||||| Sbjct 61174 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGCTGATCCGGAGGA 61233 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| ||| | |||| |||| | || | ||||| | ||| || Sbjct 61234 ATACCTTCCTTGTC-CTGAATCTTTGCCTTAACATTATCAATTGTGTCTGAGCTCTCAAC 61292 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || ||||| | |||||||||||| |||||||| Sbjct 61293 CTCGAGAGTGATAGTCTTCCCAGTTAAAGTTTTTACAAAGATCTGCAT 61340 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||| |||||||| | |||||| ||||| ||||| || || | | Sbjct 60919 GATTCCTTCTGAATATTGTAGTCAGCAAGAGTACGACCATCCTCAAGTTGCTTTCCAGCA 60978 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| | | ||| || || ||||| || |||||||| || |||||| ||| | | Sbjct 60979 AAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTATCCTGGATTTTAGCTTTGACA 61038 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | || |||| ||| ||||| | || | || || || |||| |||||| Sbjct 61039 TTGT-CAATTGTATCGGAACTCTCAACCTCAAGGGTAATAGTCTTTCCTGTCAAAGTTTT 61097 Query 138600 TACAAAAATCTGCAT 138614 |||||| |||||||| Sbjct 61098 TACAAAGATCTGCAT 61112 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | ||| || | || ||||| | | | ||||| || || ||||| || || Sbjct 60430 CCTCCCCTCAACCGGAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTATAATCAGCA 60489 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | | ||||| || || ||||| | | | |||| |||||| |||||||| || Sbjct 60490 AGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATTAAACGCTGCTGGTCCGGGGGA 60549 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||||||||| ||| ||| ||| | | || | || || | ||| || Sbjct 60550 ATACCTTCTTTGTCTTGGATCTTTGCTTTCACATTATCAATTGTATCTGAACTCTCAACT 60609 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | || || ||||||| || || ||||| |||||||| Sbjct 60610 TCCAGCGTGATTGTCTTCCCAGTCAACGTCTTCACAAAGATCTGCAT 60656 >seq51452 Length=252770 Score = 105 bits (116), Expect = 7e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||||||||| ||||| || | |||| || |||||||| ||||| || | Sbjct 59159 TTGACTCCTTTTGAATATTGTAATCTGCGAGAGTATGCCCATCCTCGAGCTGTTTTCCTG 59218 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| | ||| ||||| || || || |||||||||||||| |||||| ||| | Sbjct 59219 CGAAGATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTGGCTTTAA 59278 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | ||||| | ||| || |||| || | || || |||||||| || Sbjct 59279 CATTG-TCGATCGTGTCTGAACTCTCAACTTCGAGAGTTACGGTCTTGCCAGTCAGGGTC 59337 Query 138598 TTTACAAAAATCTGCAT 138614 || ||||| |||||||| Sbjct 59338 TTCACAAAGATCTGCAT 59354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||||||||| ||||| || | ||| || |||||||| ||||| || | Sbjct 4554 TTGACTCCTTTTGAATATTGTAATCAGCGAGAGTCCGTCCATCCTCGAGCTGTTTTCCTG 4613 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| | ||| ||||| || || || |||||||| || || |||||| || | Sbjct 4614 CAAAGATCAAACGTTGTTGATCTGGCGGAATACCTTCCTTATCTTGGATTTTGGCCTTAA 4673 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | ||||| | || || || | || | ||||| ||||||| |||| Sbjct 4674 CATTATCAATCGTGTCCGAGCTTTCGACTTCCAATGTGATTGTTTTCCCAGTCAAGGTTT 4733 Query 138599 TTACAAAAATCTGCAT 138614 | |||||||| ||||| Sbjct 4734 TAACAAAAATTTGCAT 4749 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||||||||| || || || | ||||||| || || ||||| || || | Sbjct 4782 TTGACTCCTTTTGAATATTATAATCTGCGAGAGTACGCCCATCTTCCAGTTGCTTCCCTG 4841 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | | || || | ||| || ||||| || ||||| || ||||| || |||| | ||| Sbjct 4842 CAAATATCAGCCTCTGCTGATCCGGTGGGATACCCTCCTTGTC-TTGTATTTTCGCCTTA 4900 Query 138539 --ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 |||| || | |||||| | || || || | || | ||||| ||||| || || Sbjct 4901 ACATTG-TCTATGGTGTCCGAGCTTTCAACTTCCAGTGTGATGGTTTTTCCAGTTAGGGT 4959 Query 138597 TTTTACAAAAATCTGCAT 138614 ||| ||||| |||||||| Sbjct 4960 TTTAACAAAGATCTGCAT 4977 >seq50758 Length=122349 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | ||| || || | | | |||||||| || |||||||| || Sbjct 118490 CCGCCGCGAAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCG 118431 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || ||||| || |||| | |||| || | || ||||| || || Sbjct 118430 AGGGTTCGGCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGTGGA 118371 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | || | || | |||| | | ||||||| |||| Sbjct 118370 ATACCCTCCTTGTCC-TGAATCTTAGCCTTGACGTTGT-CAATTGTGTCGGAGCTTTCCA 118313 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||||| ||||||| ||| || |||||||||||||| Sbjct 118312 CCTCCAAAGTGATGGTTTTCCCAGTCAAAGTCTTCACAAAAATCTGCAT 118264 >seq19192 Length=430667 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| ||||| || | ||| || || || || || || || | | Sbjct 373895 GACTCCTTTTGAATATTGTAATCAGCAAGAGTTCGGCCATCTTCAAGCTGCTTTCCAGCA 373954 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| || | ||| ||||| ||||| || ||||| ||||| ||| |||| | || | Sbjct 373955 AAGATCAGCCTCTGCTGGTCTGGAGGAATCCCTTCCTTGTC-TTGAATTTTCGCCTTCAC 374013 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||| | ||| ||||| | || | ||||| ||||| |||||||| Sbjct 374014 GTTATCAATTGTGTCTGAACTCTCGACCTCAAGAGTAATGGTTTTGCCAGTAAGAGTTTT 374073 Query 138600 TACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 374074 AACAAATATCTGCATG 374089 >seq3636 Length=134301 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || | || | | | |||||||| || ||||||||||| Sbjct 15625 CCACCACGCAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 15566 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| ||| || || || || || || | | |||| | | ||| || || ||||| Sbjct 15565 AGAGTGCGCCCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGG 15506 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | ||||| | | |||||||| ||| || Sbjct 15505 ATGCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGT-CAATGGTGTCGGAGCTCTCAAC 15447 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || |||| |||||||||||||||||||| Sbjct 15446 CTCAAGGGTGATGGTCTTCCCGGTCAATGTTTTTACAAAAATCTGCAT 15399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495932832140160