Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq2125 87.8 2e-12
seq9544 86.0 8e-12
>seq2125
Length=154978
Score = 87.8 bits (96), Expect = 2e-12
Identities = 244/367 (66%), Gaps = 8/367 (2%)
Strand=Plus/Plus
Query 12704 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 12763
|||||| || ||||| | || | || |||||| ||||| || || || |||||
Sbjct 125589 ATCAAATCGCCCTGGTCTAAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 125648
Query 12764 GATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 12823
| || | || || || | | ||||| || ||||| || ||||| ||||| || |
Sbjct 125649 AACAACTATTATACCAGTATTGCCTTCGAAACCGTCCATTTCTGTCAATAGTTGGTTCAG 125708
Query 12824 GGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACG 12881
||| ||||| | |||||||||| | | | | | || | | | |||| || ||
Sbjct 125709 GGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAACA 125766
Query 12882 GCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAA-CTTCAAAGAT 12940
|| |||||||| |||| || || || || || |||||| ||| ||| ||| |
Sbjct 125767 GCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA-AG 125825
Query 12941 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACA 13000
||| || |||| ||| || ||||| ||||||||||| ||||| | | | ||| |
Sbjct 125826 ATCACGTACTCGAGAGGCTCCAACACCAACAAACATCTCAACAAATTCTGAACCTGAA-A 125884
Query 13001 TTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 13059
||| || || || || | |||||| || || || || || ||||||||||| |
Sbjct 125885 TTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCCAG 125944
Query 13060 TCCCTGG 13066
| || ||
Sbjct 125945 TACCCGG 125951
>seq9544
Length=262091
Score = 86.0 bits (94), Expect = 8e-12
Identities = 189/279 (68%), Gaps = 6/279 (2%)
Strand=Plus/Minus
Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851
|| |||||||| ||||||||||||||||| || || || || | ||||||||| | |
Sbjct 111981 AACCCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCC--AC 111924
Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909
| ||| || |||| | ||| | || || || ||||| || ||||| || || ||||
Sbjct 111923 CTCCCATTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATAC 111864
Query 12910 ACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968
| || | ||| || || || || | ||| | |||||| || || ||||||
Sbjct 111863 AAGG-CGCTTTCGACTTCGCCTTCTCGAACAAATCCCTCACTCTAGAAGCTCCTACACCC 111805
Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028
||||||| ||| ||||| | | || | |||| || || || || | ||||||
Sbjct 111804 ACAAACAACTCAACAAACTCTGATGCCGCACATGAGAAAAATGGTACACCAGCTTCACCA 111745
Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067
|| | |||| || | || ||||| || || || |||
Sbjct 111744 GCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGGT 111706
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613099769868480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |