Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq32633 100 2e-16 seq20296 98.7 7e-16 seq51452 96.9 2e-15 seq50758 96.9 2e-15 seq49251 84.2 2e-11 seq19192 84.2 2e-11 >seq32633 Length=132462 Score = 100 bits (110), Expect = 2e-16 Identities = 162/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || | ||| || || |||||||| | ||| ||||| || || ||||||| Sbjct 60426 CATC-CCTCCCCTCAACCGGAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTATAAT 60484 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | | | |||| || | || || || ||||||||||||||||||| |||| Sbjct 60485 CAGCAAGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATTAAACGCTGCTGGTCCG 60544 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 ||| | ||||||||||| || ||| ||| | | | | ||| |||| || | Sbjct 60545 GGGGAATACCTTCTTTGTCTTGGATCTTTGCTTTCACATTATCAATTGTATCTGAACTCT 60604 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || |||| || ||||| || || || || || || || ||||||||||| Sbjct 60605 CAACTTCCAGCGTGATTGTCTTCCCAGTCAACGTCTTCACAAAGATCTGCAT 60656 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATC 39566 ||| |||| ||||| |||| ||| || || ||||| || || || | | || |||| Sbjct 60900 CAGCACCAGATGCAGAGTGGATTCCTTCTGAATATTGTAGTCAGCAAGAGTACGACCATC 60959 Query 39567 GTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626 || | ||| || || |||| || || | ||||||||| | || | ||||||||| || Sbjct 60960 CTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTATC 61019 Query 39627 GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 ||||| ||| | | | | ||| || | || || || || | ||||| || Sbjct 61020 CTGGATTTTAGCTTTGACATTGTCAATTGTATCGGAACTCTCAACCTCAAGGGTAATAGT 61079 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || ||||||||||| ||||||||||| Sbjct 61080 CTTTCCTGTCAAAGTTTTTACAAAGATCTGCAT 61112 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||||||| || || | || | ||| || ||||| || || || || || Sbjct 61114 CCACCACGCAAACGGAGAACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCA 61173 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| || | ||| || || |||| || || | |||||||||| || Sbjct 61174 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGCTGATCCGGAGGA 61233 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| ||||| || ||| |||| | | | |||||||| ||| || || Sbjct 61234 ATACCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATTGTGTCTGAGCTCTCAACC 61293 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| || || || || |||||||||||||| ||||||||||| Sbjct 61294 TCGAGAGTGATAGTCTTCCCAGTTAAAGTTTTTACAAAGATCTGCAT 61340 >seq20296 Length=523354 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | |||| ||| || || || || ||||| || Sbjct 452967 CCACCACGGAGACGAAGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCT 452908 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| |||| ||||| ||| | ||||| | |||||||| |||| || Sbjct 452907 AGGGTTCGGCCATCCTCCAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGA 452848 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | |||||| ||||| || ||| || | ||| | | | |||||| | | ||| || Sbjct 452847 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCA-CGTTGTCGATTGTGTCGGAGGATTCGAC 452789 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || || |||||||||| ||||| |||||||||||||| Sbjct 452788 CTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 452741 >seq51452 Length=252770 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| ||||||||||| || | | || |||| |||| ||| ||||| |||| Sbjct 4787 TCCTTTTGAATATTATAATCTGCGAGAGTACGCCCATCTTCCAGTTGCTTCCCTGCAAAT 4846 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | ||||||||||| || | || || ||||| |||||| |||| | Sbjct 4847 ATCAGCCTCTGCTGATCCGGTGGGATACCCTCCTTGTCTTGTATTTTCGCCTTAACATTG 4906 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 ||| ||||| | |||||| || |||| || || ||||| || |||| ||||| || Sbjct 4907 TCTATGGTGTCCGAGCTTTCAACTTCCAGTGTGATGGTTTTTCCAGTTAGGGTTTTAACA 4966 Query 39709 AAGATCTGCAT 39719 ||||||||||| Sbjct 4967 AAGATCTGCAT 4977 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| ||||||||||| |||| | ||| |||| |||||||| ||||| ||||| Sbjct 58936 TCCTTTTGAATATTATAATCTGCCAGAGTGCGCCCATCTTCCAATTGCTTCCCAGCAAAA 58995 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | || || |||| || | ||||| || || ||||| |||| | Sbjct 58996 ATCAGTCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTCGTCTTAACATTA 59055 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | || || | ||| || || ||||| || |||||||| || ||||| ||||| ||| Sbjct 59056 TCAATAGTATCCGAGCTCTCAACTTCCAACGTGATTGTTTTTCCGGTTAATGTTTTAACG 59115 Query 39709 AAGATCTGCAT 39719 || || ||||| Sbjct 59116 AAAATTTGCAT 59126 >seq50758 Length=122349 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || || | |||| ||| || || || ||||||||||| ||| Sbjct 118946 CCACCACGGAGACGGAGGACAAGGTGCAGGGTGGACTCCTTCTGAATATTATAATCAGCC 118887 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | |||| |||||||| ||||| |||| || | | ||||||||||| ||| Sbjct 118886 AGAGTCCTTCCATCTTCCAATTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCCGGGGGA 118827 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | || || ||||| | || || | | || ||| || || || | ||||||| Sbjct 118826 ATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCAATA--GTATCAGAACTTTCCA 118769 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || ||||| || || || ||||| || || |||||||| Sbjct 118768 CCTCCAAAGTGATGGTTTTCCCGGTCAACGTTTTCACAAAAATCTGCAT 118720 >seq49251 Length=53185 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || || | ||| | ||| ||| || || || || |||||||| Sbjct 47152 CCACCACGGAGACGGAGCACGAGATGAAGAGTCGATTCCTTCTGGATGTTGTAATCGGCT 47211 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || | || || | || || ||||| ||||| | |||||||||||| | ||| Sbjct 47212 AGGGTTCGGCCGTCTTCAAGCTGCTTTCCGCCGAAAATCAGACGCTGCTGATCTGGGGGA 47271 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| | || || | | || |||| | |||||| | ||| | Sbjct 47272 ATCCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCG--ATTGTGTCGGAAGATTCAA 47329 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | || ||||||||||||| || ||||| |||||||||||||| Sbjct 47330 CCTCAAGGGTGATTGTTTTACCCGCTAGGGTTTTCACGAAGATCTGCAT 47378 >seq19192 Length=430667 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| ||||| ||||| ||||| || | ||| |||| |||| || || || |||| Sbjct 373213 TTCCTTTTGGATATTGTAATCTGCAAGGGTGCGCCCATCCTCCAGCTGCTTACCAGCAAA 373272 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || | | ||||||||| | || | ||||||||||| | | |||| | | ||| Sbjct 373273 TATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTGTC-CTGAATTTTGGCCTTCACGT 373331 Query 39648 CG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 | | | ||||| | ||| ||||| |||||||| || || || || || |||||||| | Sbjct 373332 TGTCAATAGTGTCAGAGCTCTCCACTTCCAAAGTGATGGTCTTCCCTGTCAAAGTTTTAA 373391 Query 39707 CGAAGATCTGCAT 39719 | || |||||||| Sbjct 373392 CAAATATCTGCAT 373404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347144679052424