Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq32633 100 2e-16
seq20296 98.7 7e-16
seq51452 96.9 2e-15
seq50758 96.9 2e-15
seq49251 84.2 2e-11
seq19192 84.2 2e-11
>seq32633
Length=132462
Score = 100 bits (110), Expect = 2e-16
Identities = 162/232 (70%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547
|||| || || | ||| || || |||||||| | ||| ||||| || || |||||||
Sbjct 60426 CATC-CCTCCCCTCAACCGGAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTATAAT 60484
Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607
| || | | | |||| || | || || || ||||||||||||||||||| ||||
Sbjct 60485 CAGCAAGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATTAAACGCTGCTGGTCCG 60544
Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667
||| | ||||||||||| || ||| ||| | | | | ||| |||| || |
Sbjct 60545 GGGGAATACCTTCTTTGTCTTGGATCTTTGCTTTCACATTATCAATTGTATCTGAACTCT 60604
Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || |||| || ||||| || || || || || || || |||||||||||
Sbjct 60605 CAACTTCCAGCGTGATTGTCTTCCCAGTCAACGTCTTCACAAAGATCTGCAT 60656
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATC 39566
||| |||| ||||| |||| ||| || || ||||| || || || | | || ||||
Sbjct 60900 CAGCACCAGATGCAGAGTGGATTCCTTCTGAATATTGTAGTCAGCAAGAGTACGACCATC 60959
Query 39567 GTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626
|| | ||| || || |||| || || | ||||||||| | || | ||||||||| ||
Sbjct 60960 CTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTATC 61019
Query 39627 GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686
||||| ||| | | | | ||| || | || || || || | ||||| ||
Sbjct 61020 CTGGATTTTAGCTTTGACATTGTCAATTGTATCGGAACTCTCAACCTCAAGGGTAATAGT 61079
Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| || || ||||||||||| |||||||||||
Sbjct 61080 CTTTCCTGTCAAAGTTTTTACAAAGATCTGCAT 61112
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || |||||||| || || | || | ||| || ||||| || || || || ||
Sbjct 61114 CCACCACGCAAACGGAGAACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCA 61173
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| || |||| || | ||| || || |||| || || | |||||||||| ||
Sbjct 61174 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGCTGATCCGGAGGA 61233
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| ||||| ||||| || ||| |||| | | | |||||||| ||| || ||
Sbjct 61234 ATACCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATTGTGTCTGAGCTCTCAACC 61293
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | ||| || || || || |||||||||||||| |||||||||||
Sbjct 61294 TCGAGAGTGATAGTCTTCCCAGTTAAAGTTTTTACAAAGATCTGCAT 61340
>seq20296
Length=523354
Score = 98.7 bits (108), Expect = 7e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| || |||||||| | |||| ||| || || || || ||||| ||
Sbjct 452967 CCACCACGGAGACGAAGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCT 452908
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| || |||| |||| ||||| ||| | ||||| | |||||||| |||| ||
Sbjct 452907 AGGGTTCGGCCATCCTCCAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGA 452848
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671
| |||||| ||||| || ||| || | ||| | | | |||||| | | ||| ||
Sbjct 452847 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCA-CGTTGTCGATTGTGTCGGAGGATTCGAC 452789
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | || || || |||||||||| ||||| ||||||||||||||
Sbjct 452788 CTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 452741
>seq51452
Length=252770
Score = 96.9 bits (106), Expect = 2e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
|| ||||| ||||||||||| || | | || |||| |||| ||| ||||| ||||
Sbjct 4787 TCCTTTTGAATATTATAATCTGCGAGAGTACGCCCATCTTCCAGTTGCTTCCCTGCAAAT 4846
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648
|| | | ||||||||||| || | || || ||||| |||||| |||| |
Sbjct 4847 ATCAGCCTCTGCTGATCCGGTGGGATACCCTCCTTGTCTTGTATTTTCGCCTTAACATTG 4906
Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708
||| ||||| | |||||| || |||| || || ||||| || |||| ||||| ||
Sbjct 4907 TCTATGGTGTCCGAGCTTTCAACTTCCAGTGTGATGGTTTTTCCAGTTAGGGTTTTAACA 4966
Query 39709 AAGATCTGCAT 39719
|||||||||||
Sbjct 4967 AAGATCTGCAT 4977
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
|| ||||| ||||||||||| |||| | ||| |||| |||||||| ||||| |||||
Sbjct 58936 TCCTTTTGAATATTATAATCTGCCAGAGTGCGCCCATCTTCCAATTGCTTCCCAGCAAAA 58995
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648
|| | | || || |||| || | ||||| || || ||||| |||| |
Sbjct 58996 ATCAGTCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTCGTCTTAACATTA 59055
Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708
| | || || | ||| || || ||||| || |||||||| || ||||| ||||| |||
Sbjct 59056 TCAATAGTATCCGAGCTCTCAACTTCCAACGTGATTGTTTTTCCGGTTAATGTTTTAACG 59115
Query 39709 AAGATCTGCAT 39719
|| || |||||
Sbjct 59116 AAAATTTGCAT 59126
>seq50758
Length=122349
Score = 96.9 bits (106), Expect = 2e-15
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| || || | |||| ||| || || || ||||||||||| |||
Sbjct 118946 CCACCACGGAGACGGAGGACAAGGTGCAGGGTGGACTCCTTCTGAATATTATAATCAGCC 118887
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| | | | |||| |||||||| ||||| |||| || | | ||||||||||| |||
Sbjct 118886 AGAGTCCTTCCATCTTCCAATTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCCGGGGGA 118827
Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| || || ||||| | || || | | || ||| || || || | |||||||
Sbjct 118826 ATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCAATA--GTATCAGAACTTTCCA 118769
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| |||||||| || ||||| || || || ||||| || || ||||||||
Sbjct 118768 CCTCCAAAGTGATGGTTTTCCCGGTCAACGTTTTCACAAAAATCTGCAT 118720
>seq49251
Length=53185
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| || || | ||| | ||| ||| || || || || ||||||||
Sbjct 47152 CCACCACGGAGACGGAGCACGAGATGAAGAGTCGATTCCTTCTGGATGTTGTAATCGGCT 47211
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| || | || || | || || ||||| ||||| | |||||||||||| | |||
Sbjct 47212 AGGGTTCGGCCGTCTTCAAGCTGCTTTCCGCCGAAAATCAGACGCTGCTGATCTGGGGGA 47271
Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| ||||| ||||| | || || | | || |||| | |||||| | ||| |
Sbjct 47272 ATCCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCG--ATTGTGTCGGAAGATTCAA 47329
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || | || ||||||||||||| || ||||| ||||||||||||||
Sbjct 47330 CCTCAAGGGTGATTGTTTTACCCGCTAGGGTTTTCACGAAGATCTGCAT 47378
>seq19192
Length=430667
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587
||| ||||| ||||| ||||| || | ||| |||| |||| || || || ||||
Sbjct 373213 TTCCTTTTGGATATTGTAATCTGCAAGGGTGCGCCCATCCTCCAGCTGCTTACCAGCAAA 373272
Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647
|| | | ||||||||| | || | ||||||||||| | | |||| | | |||
Sbjct 373273 TATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTGTC-CTGAATTTTGGCCTTCACGT 373331
Query 39648 CG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706
| | | ||||| | ||| ||||| |||||||| || || || || || |||||||| |
Sbjct 373332 TGTCAATAGTGTCAGAGCTCTCCACTTCCAAAGTGATGGTCTTCCCTGTCAAAGTTTTAA 373391
Query 39707 CGAAGATCTGCAT 39719
| || ||||||||
Sbjct 373392 CAAATATCTGCAT 373404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347144679052424
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |