Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2125 147 3e-30 seq9544 114 2e-20 seq37818 105 8e-18 >seq2125 Length=154978 Score = 147 bits (162), Expect = 3e-30 Identities = 275/397 (69%), Gaps = 8/397 (2%) Strand=Plus/Plus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| || ||||| | ||| | || ||||| ||||| | ||||| ||||| || Sbjct 125589 ATCAAATCGCCCTGGTCTAAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 125648 Query 15947 GATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAAT 16006 | || | ||||| || | | || ||||| ||||| |||||||| || ||||| | Sbjct 125649 AACAACTATTATACCAGTATTGCCTTCGAAACCGTCCATTTCTGTCAATAGTTGGTTCAG 125708 Query 16007 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACG 16064 || ||||||| |||||||||| || | | | | |||| | | |||| || || Sbjct 125709 GGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAACA 125766 Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA-CTTCAAAGAG 16123 |||||||| ||||||| || || ||||| || |||||| || ||| ||| || Sbjct 125767 GCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA-AG 125825 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 16183 ||| ||||| || ||| || ||||||||||||||||| ||||| | || | ||| | Sbjct 125826 ATCACGTACTCGAGAGGCTCCAACACCAACAAACATCTCAACAAATTCTGAACCTGAA-A 125884 Query 16184 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 ||| || || || ||| | |||||| ||||| || || || || ||||| || | Sbjct 125885 TTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCCAG 125944 Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 16279 |||| || ||| | || || ||||| |||||| Sbjct 125945 TACCCGGAGGACCAACAAGAAGAACACCTTTTGGAAT 125981 >seq9544 Length=262091 Score = 114 bits (126), Expect = 2e-20 Identities = 198/282 (70%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| |||||||| || ||||| || || |||||||| || || | ||||||||| | Sbjct 111982 AAACCCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 111925 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| || |||| | ||| ||||||| ||||||||||||||||| || || || Sbjct 111924 CCTCCCATTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATA 111865 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || ||||| || || || || | ||||| ||| || | || || || Sbjct 111864 CAAGG--CGCTTTCGACTTCGCCTTCTCGAACAAATCCC--TCACTCTAGAAGCTCCTAC 111809 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||| ||||||| ||| ||||| | || || | |||| || || || ||| || ||| Sbjct 111808 ACCCACAAACAACTCAACAAACTCTGATGCCGCACATGAGAAAAATGGTACACCAGCTTC 111749 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||| |||| |||| || | ||| ||||| || ||||| || Sbjct 111748 ACCAGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 111707 >seq37818 Length=88620 Score = 105 bits (116), Expect = 8e-18 Identities = 193/279 (69%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| |||||||| ||||| ||||| || || || | |||||||| | | Sbjct 62138 AACCCATCCATTTCTGTCAACAGCTGATTAATCGTCTGCTCTCTCTCATCATTTCCA--C 62081 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | | | || || | | |||| |||| || ||||||||||||||||| || || || | Sbjct 62080 CTCCAAGTCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACAATAC 62021 Query 16093 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 | || ||||| || || ||||| | ||||| ||| | || |||||||| Sbjct 62020 AAGG--CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCACACC 61963 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210 ||||||| ||| ||||| | || || | |||| || || || ||| | ||||| Sbjct 61962 GACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCTCACC 61903 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || | |||| || | ||| |||||||| ||||| || Sbjct 61902 AGCTACTGCTCTTGCCAAAAGTGTCTTACCAGTACCAGG 61864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620330164972160