Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq2125 147 3e-30
seq9544 114 2e-20
seq37818 105 8e-18
>seq2125
Length=154978
Score = 147 bits (162), Expect = 3e-30
Identities = 275/397 (69%), Gaps = 8/397 (2%)
Strand=Plus/Plus
Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946
|||||| || ||||| | ||| | || ||||| ||||| | ||||| ||||| ||
Sbjct 125589 ATCAAATCGCCCTGGTCTAAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 125648
Query 15947 GATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAAT 16006
| || | ||||| || | | || ||||| ||||| |||||||| || ||||| |
Sbjct 125649 AACAACTATTATACCAGTATTGCCTTCGAAACCGTCCATTTCTGTCAATAGTTGGTTCAG 125708
Query 16007 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACG 16064
|| ||||||| |||||||||| || | | | | |||| | | |||| || ||
Sbjct 125709 GGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAACA 125766
Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA-CTTCAAAGAG 16123
|||||||| ||||||| || || ||||| || |||||| || ||| ||| ||
Sbjct 125767 GCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA-AG 125825
Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 16183
||| ||||| || ||| || ||||||||||||||||| ||||| | || | ||| |
Sbjct 125826 ATCACGTACTCGAGAGGCTCCAACACCAACAAACATCTCAACAAATTCTGAACCTGAA-A 125884
Query 16184 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242
||| || || || ||| | |||||| ||||| || || || || ||||| || |
Sbjct 125885 TTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCCAG 125944
Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 16279
|||| || ||| | || || ||||| ||||||
Sbjct 125945 TACCCGGAGGACCAACAAGAAGAACACCTTTTGGAAT 125981
>seq9544
Length=262091
Score = 114 bits (126), Expect = 2e-20
Identities = 198/282 (70%), Gaps = 12/282 (4%)
Strand=Plus/Minus
Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033
||| |||||||| || ||||| || || |||||||| || || | ||||||||| |
Sbjct 111982 AAACCCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 111925
Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091
| | ||| || |||| | ||| ||||||| ||||||||||||||||| || || ||
Sbjct 111924 CCTCCCATTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATA 111865
Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147
|| || ||||| || || || || | ||||| ||| || | || || ||
Sbjct 111864 CAAGG--CGCTTTCGACTTCGCCTTCTCGAACAAATCCC--TCACTCTAGAAGCTCCTAC 111809
Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207
||| ||||||| ||| ||||| | || || | |||| || || || ||| || |||
Sbjct 111808 ACCCACAAACAACTCAACAAACTCTGATGCCGCACATGAGAAAAATGGTACACCAGCTTC 111749
Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249
||| |||| |||| || | ||| ||||| || ||||| ||
Sbjct 111748 ACCAGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 111707
>seq37818
Length=88620
Score = 105 bits (116), Expect = 8e-18
Identities = 193/279 (69%), Gaps = 8/279 (3%)
Strand=Plus/Minus
Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034
|| |||||||| |||||||| ||||| ||||| || || || | |||||||| | |
Sbjct 62138 AACCCATCCATTTCTGTCAACAGCTGATTAATCGTCTGCTCTCTCTCATCATTTCCA--C 62081
Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092
| | | || || | | |||| |||| || ||||||||||||||||| || || || |
Sbjct 62080 CTCCAAGTCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACAATAC 62021
Query 16093 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150
| || ||||| || || ||||| | ||||| ||| | || ||||||||
Sbjct 62020 AAGG--CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCACACC 61963
Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210
||||||| ||| ||||| | || || | |||| || || || ||| | |||||
Sbjct 61962 GACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCTCACC 61903
Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249
|| | |||| || | ||| |||||||| ||||| ||
Sbjct 61902 AGCTACTGCTCTTGCCAAAAGTGTCTTACCAGTACCAGG 61864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620330164972160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |