Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq2125 134 2e-26
seq9544 122 1e-22
seq37818 102 1e-16
seq49945 96.9 4e-15
seq49814 95.1 1e-14
>seq2125
Length=154978
Score = 134 bits (148), Expect = 2e-26
Identities = 252/366 (69%), Gaps = 6/366 (2%)
Strand=Plus/Plus
Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253
|||||| || ||||| | ||| | || ||||| ||||| | ||||| || || ||
Sbjct 125589 ATCAAATCGCCCTGGTCTAAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 125648
Query 9254 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9313
| || | ||||| || | || ||||| ||||| |||||||| |||||||| |
Sbjct 125649 AACAACTATTATACCAGTATTGCCTTCGAAACCGTCCATTTCTGTCAATAGTTGGTTCAG 125708
Query 9314 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACG 9371
|| ||||||| |||||||||| || | | | | |||| | | |||| || ||
Sbjct 125709 GGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAACA 125766
Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431
|||||||| ||||||| || ||||| || || |||||| ||| | | || |||
Sbjct 125767 GCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAAAGA 125826
Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491
|| || || | ||| || ||||||||||||||||| ||||| | || | ||| ||
Sbjct 125827 TCACGTACTCGAGAGGCTCCAACACCAACAAACATCTCAACAAATTCTGAACCTGAA-AT 125885
Query 9492 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550
|| || || || ||| | |||||| ||||| || || || || ||||| || ||
Sbjct 125886 TGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCCAGT 125945
Query 9551 ACCTGG 9556
||| ||
Sbjct 125946 ACCCGG 125951
>seq9544
Length=262091
Score = 122 bits (134), Expect = 1e-22
Identities = 197/279 (71%), Gaps = 6/279 (2%)
Strand=Plus/Minus
Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340
||| |||||||| || ||||| ||||| |||||||| || || | ||||||||| |
Sbjct 111982 AAACCCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 111925
Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398
| | ||| || |||| | ||| ||||||| ||||||||||||||||| || ||||||
Sbjct 111924 CCTCCCATTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATA 111865
Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457
|| || | ||| | || | || || | ||| | || || || || |||||
Sbjct 111864 CAAGG-CGCTTTCGACTTCGCCTTCTCGAACAAATCCCTCACTCTAGAAGCTCCTACACC 111806
Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517
||||||| ||| ||||| | || || | |||| || || || ||| || ||||||
Sbjct 111805 CACAAACAACTCAACAAACTCTGATGCCGCACATGAGAAAAATGGTACACCAGCTTCACC 111746
Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
|||| |||| || | ||| ||||| || ||||| ||
Sbjct 111745 AGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 111707
>seq37818
Length=88620
Score = 102 bits (112), Expect = 1e-16
Identities = 192/278 (69%), Gaps = 6/278 (2%)
Strand=Plus/Minus
Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341
|| |||||||| |||||||| || || ||||| || || || | |||||||| | |
Sbjct 62138 AACCCATCCATTTCTGTCAACAGCTGATTAATCGTCTGCTCTCTCTCATCATTTCCA--C 62081
Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399
| | | || || | | |||| |||| || ||||||||||||||||| || |||||||
Sbjct 62080 CTCCAAGTCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACAATAC 62021
Query 9400 ATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458
| || | ||| | || | ||||| | ||| | || || || ||||||||
Sbjct 62020 AAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCACACCG 61962
Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9518
||||||| ||| ||||| | || || | |||| || || || ||| | |||||
Sbjct 61961 ACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCTCACCA 61902
Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
|| | |||| || | ||| |||||||| ||||| ||
Sbjct 61901 GCTACTGCTCTTGCCAAAAGTGTCTTACCAGTACCAGG 61864
>seq49945
Length=41976
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/225 (70%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227
|| |||||||| || ||||| || || | ||||| | ||| ||| ||||| | |||
Sbjct 17057 TGAGGTCTTGGAGTTCCAGCGTTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGA 17116
Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287
|||||| | ||||||| | |||||| ||||| || ||| |||||| || | |
Sbjct 17117 GACATCAAATGATATGTCTTGATGACAGATTCAATATCATCCTTGTGGATCCCAACAGAT 17176
Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 107346
|| | ||| | ||||| ||| || |||| | | | || | || | || | || ||
Sbjct 17177 ACTCTCATCAGCATGTGTTGTGGCCTTTCTACAACTTTACCCT-GAATCTTTAAGAGGTA 17235
Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391
| ||||||||||||||| |||||||||| || ||||| ||||
Sbjct 17236 AGACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAATCAAAGTC 17280
Score = 89.7 bits (98), Expect = 6e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507
||||| |||| || || ||||| || | |||||| ||||| || ||| | ||||
Sbjct 15699 ACATATCTTGGCAGAGCAATTGAAGCAAGATTGCATACAGCAGTTTCAGTTGCACTTGTG 15758
Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567
|| || | ||| || ||||||||||| || ||| || || || | ||||| ||||||
Sbjct 15759 TATTCAATAATCTCAGTACACAAGTTAGACGACTTGATAGTGCCAAGATTCTGCTGGTTA 15818
Query 106568 CTCTTTTTGTTGCACGCATCCT 106589
|| ||| ||||||||| |||||
Sbjct 15819 CTTTTTCTGTTGCACGTATCCT 15840
>seq49814
Length=37993
Score = 95.1 bits (104), Expect = 1e-14
Identities = 189/278 (68%), Gaps = 4/278 (1%)
Strand=Plus/Plus
Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253
|||||| | || || | ||| | || | |||||| || ||| | ||| || || ||
Sbjct 31938 ATCAAATCTTCCAGGTCTAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTAGCAGC 31997
Query 9254 GATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311
||||||| | || |||||| | ||||||||||| || || | ||||||||||
Sbjct 31998 AATGACAATGACTCCAGTGTTTCC--AGTGAAACCATCCATTTCGGTGAGAAGTTGGTTA 32055
Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9371
| || || || | ||||||||| | | ||||| | | |||| | || ||
Sbjct 32056 AGTGTCTGCTCTCTTTCATCATTTCCACCACCAATACCAGTTCCTCTTTGCCTCCCAACA 32115
Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431
||||||||||||||||| ||||| | ||| ||| ||||| || | | || |
Sbjct 32116 GCATCAATCTCATCAATAAAGACTAAACAAGGTGAATTTTGCTTTGCCTTGTTGAATAAG 32175
Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTC 9469
|| | ||| || || ||||||||||||||||||||
Sbjct 32176 TCCCTAACTCTAGAAGCTCCCACACCAACAAACATCTC 32213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589588993750720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |