Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2125 134 2e-26 seq9544 122 1e-22 seq37818 102 1e-16 seq49945 96.9 4e-15 seq49814 95.1 1e-14 >seq2125 Length=154978 Score = 134 bits (148), Expect = 2e-26 Identities = 252/366 (69%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| || ||||| | ||| | || ||||| ||||| | ||||| || || || Sbjct 125589 ATCAAATCGCCCTGGTCTAAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 125648 Query 9254 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9313 | || | ||||| || | || ||||| ||||| |||||||| |||||||| | Sbjct 125649 AACAACTATTATACCAGTATTGCCTTCGAAACCGTCCATTTCTGTCAATAGTTGGTTCAG 125708 Query 9314 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACG 9371 || ||||||| |||||||||| || | | | | |||| | | |||| || || Sbjct 125709 GGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAACA 125766 Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 |||||||| ||||||| || ||||| || || |||||| ||| | | || ||| Sbjct 125767 GCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAAAGA 125826 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 || || || | ||| || ||||||||||||||||| ||||| | || | ||| || Sbjct 125827 TCACGTACTCGAGAGGCTCCAACACCAACAAACATCTCAACAAATTCTGAACCTGAA-AT 125885 Query 9492 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 || || || || ||| | |||||| ||||| || || || || ||||| || || Sbjct 125886 TGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCCAGT 125945 Query 9551 ACCTGG 9556 ||| || Sbjct 125946 ACCCGG 125951 >seq9544 Length=262091 Score = 122 bits (134), Expect = 1e-22 Identities = 197/279 (71%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||||||| || ||||| ||||| |||||||| || || | ||||||||| | Sbjct 111982 AAACCCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 111925 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| || |||| | ||| ||||||| ||||||||||||||||| || |||||| Sbjct 111924 CCTCCCATTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATA 111865 Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || | ||| | || | || || | ||| | || || || || ||||| Sbjct 111864 CAAGG-CGCTTTCGACTTCGCCTTCTCGAACAAATCCCTCACTCTAGAAGCTCCTACACC 111806 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 ||||||| ||| ||||| | || || | |||| || || || ||| || |||||| Sbjct 111805 CACAAACAACTCAACAAACTCTGATGCCGCACATGAGAAAAATGGTACACCAGCTTCACC 111746 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||| |||| || | ||| ||||| || ||||| || Sbjct 111745 AGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 111707 >seq37818 Length=88620 Score = 102 bits (112), Expect = 1e-16 Identities = 192/278 (69%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||| |||||||| || || ||||| || || || | |||||||| | | Sbjct 62138 AACCCATCCATTTCTGTCAACAGCTGATTAATCGTCTGCTCTCTCTCATCATTTCCA--C 62081 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | | | || || | | |||| |||| || ||||||||||||||||| || ||||||| Sbjct 62080 CTCCAAGTCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACAATAC 62021 Query 9400 ATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 | || | ||| | || | ||||| | ||| | || || || |||||||| Sbjct 62020 AAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCACACCG 61962 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9518 ||||||| ||| ||||| | || || | |||| || || || ||| | ||||| Sbjct 61961 ACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCTCACCA 61902 Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || | |||| || | ||| |||||||| ||||| || Sbjct 61901 GCTACTGCTCTTGCCAAAAGTGTCTTACCAGTACCAGG 61864 >seq49945 Length=41976 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || |||||||| || ||||| || || | ||||| | ||| ||| ||||| | ||| Sbjct 17057 TGAGGTCTTGGAGTTCCAGCGTTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGA 17116 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | ||||||| | |||||| ||||| || ||| |||||| || | | Sbjct 17117 GACATCAAATGATATGTCTTGATGACAGATTCAATATCATCCTTGTGGATCCCAACAGAT 17176 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 107346 || | ||| | ||||| ||| || |||| | | | || | || | || | || || Sbjct 17177 ACTCTCATCAGCATGTGTTGTGGCCTTTCTACAACTTTACCCT-GAATCTTTAAGAGGTA 17235 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391 | ||||||||||||||| |||||||||| || ||||| |||| Sbjct 17236 AGACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAATCAAAGTC 17280 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||||| |||| || || ||||| || | |||||| ||||| || ||| | |||| Sbjct 15699 ACATATCTTGGCAGAGCAATTGAAGCAAGATTGCATACAGCAGTTTCAGTTGCACTTGTG 15758 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 || || | ||| || ||||||||||| || ||| || || || | ||||| |||||| Sbjct 15759 TATTCAATAATCTCAGTACACAAGTTAGACGACTTGATAGTGCCAAGATTCTGCTGGTTA 15818 Query 106568 CTCTTTTTGTTGCACGCATCCT 106589 || ||| ||||||||| ||||| Sbjct 15819 CTTTTTCTGTTGCACGTATCCT 15840 >seq49814 Length=37993 Score = 95.1 bits (104), Expect = 1e-14 Identities = 189/278 (68%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| | || || | ||| | || | |||||| || ||| | ||| || || || Sbjct 31938 ATCAAATCTTCCAGGTCTAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTAGCAGC 31997 Query 9254 GATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 ||||||| | || |||||| | ||||||||||| || || | |||||||||| Sbjct 31998 AATGACAATGACTCCAGTGTTTCC--AGTGAAACCATCCATTTCGGTGAGAAGTTGGTTA 32055 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9371 | || || || | ||||||||| | | ||||| | | |||| | || || Sbjct 32056 AGTGTCTGCTCTCTTTCATCATTTCCACCACCAATACCAGTTCCTCTTTGCCTCCCAACA 32115 Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 ||||||||||||||||| ||||| | ||| ||| ||||| || | | || | Sbjct 32116 GCATCAATCTCATCAATAAAGACTAAACAAGGTGAATTTTGCTTTGCCTTGTTGAATAAG 32175 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTC 9469 || | ||| || || |||||||||||||||||||| Sbjct 32176 TCCCTAACTCTAGAAGCTCCCACACCAACAAACATCTC 32213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589588993750720