Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq50574 140 2e-28 seq19192 113 3e-20 seq33627 107 1e-18 seq20296 102 5e-17 seq50758 100 2e-16 seq3636 98.7 6e-16 seq37995 95.1 8e-15 seq32633 95.1 8e-15 seq48040 87.8 1e-12 >seq50574 Length=377344 Score = 140 bits (154), Expect = 2e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||||| ||||| ||||| || | ||| || ||||||||||| ||||||| Sbjct 94591 TTCCTCCCCTCAGCCTCAGCACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCG 94650 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | || |||| |||| ||| ||||| ||||||||||| | ||||||||| | | Sbjct 94651 CAAGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAATATTAGCCTCTGCTGGTCTGGGG 94710 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | |||||||||||| ||||| |||||| | || | ||| ||| | Sbjct 94711 GAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAACTCTCGA 94770 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | ||| ||||| || || ||||| || || || |||||||||||| Sbjct 94771 CCTCAAGGGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCATA 94820 >seq19192 Length=430667 Score = 113 bits (124), Expect = 3e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | ||| |||| |||| ||| || ||||| |||||||| || | | Sbjct 373406 CCTCCCCTCAAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTATGTTATAATCAGCA 373465 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | | |||| || || || || || |||||||| ||||| ||||||||| | || Sbjct 373466 AGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAGTCGCTGCTGGTCTGGGGGA 373525 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTC 34930 | ||| |||||||| ||| || || || || |||| || | ||| ||| Sbjct 373526 ATCCCTTCCTTGTCTTGAATTTTGGCCTTCAC--AT--TATCAATTGTGTCCGAACTCTC 373581 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | ||| || |||||||| || | |||||| |||||||| ||||| Sbjct 373582 AACCTCCAAGGTGATAGTTTTTCCTGTCAAAGTCTTGACAAAGATTTGCAT 373632 Score = 84.2 bits (92), Expect = 1e-11 Identities = 161/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| | | | ||||| |||| || ||| |||||||| || || || | | Sbjct 373634 CCTCCCCTGAGACGAAGCACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATCTGCA 373693 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | | | |||| || || ||||| || |||||||| | | ||||||||| | || Sbjct 373694 AGGGTCCTTCCATCCTCAAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGGA 373753 Query 34875 ACCCCCTCCTTGTCGCTAATCTT---CTGT---TTGACGGATGCTATCGATTCACCGGCC 34928 | ||||||||||| ||||| || | ||| | |||| |||| | | | | Sbjct 373754 ATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTGTC-GATGGTATC---TGA--GCTC 373807 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || | ||| || || || ||||| | ||| || ||||| |||||||| Sbjct 373808 TCAACTTCAAGGGTGATCGTCTTGCCCGTTAAAGTTTTAACAAAAATCTGCAT 373860 >seq33627 Length=115891 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | ||| ||||| || | || || ||||| ||||||||||||| | Sbjct 50654 CCTCCCCTCAAACGCAAGACCAAATGGAGAGTCGCCTCCTTCTGGATGTTATAGTCCGCA 50595 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | | || ||||| ||||| || ||||| || | || ||||||||| |||| Sbjct 50594 AGAGTCCTGCCGTCCTCCAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGCGGG 50535 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| |||||| |||||| | || | ||| |||||| Sbjct 50534 ATACCCTCCTTGTCTTGAATCTTTGCTTTGACATTGTCAATGGTATCAGAACTCTCAACC 50475 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||||| || || || || | |||||| ||||| || ||||| Sbjct 50474 TCCAAAGTTATTGTCTTCCCAGTCAAAGTCTTGACAAAAATATGCAT 50428 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || || ||||| ||||| | ||| |||| |||| || ||||||||||| ||||| Sbjct 49941 TTCCTTTTGGATGTTGTAGTCAGCAAGAGTTCGGCCATCTTCAAGCTGTTTTCCAGCAAA 49882 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| || | || | | |||||||| |||||| |||||| Sbjct 49881 GATCAGCCTCTGCTGATCAGGAGG-AATGCATCCTTGTCTTGAATCTTAACTTTGACACT 49823 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| ||| || || | || ||||| ||||| ||||| ||||| || Sbjct 49822 GTCAATGGTGTCAGAACTCTCGACCTCAAGAGTAATGGTCTTTCCAGTGAGTGTCTTAAC 49763 Query 34970 AAAGATCTGCAT 34981 ||||||| |||| Sbjct 49762 AAAGATCGGCAT 49751 >seq20296 Length=523354 Score = 102 bits (112), Expect = 5e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||| ||| ||||| ||||| || || | ||| |||| |||| ||| Sbjct 452949 ACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGGCCATCCTCC 452890 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||||||||| || || || || |||||||| | || | || |||||||| Sbjct 452889 AGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGG 452830 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | || || || || || | ||| ||||| || Sbjct 452829 ATCTTTGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTA 452770 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATTCG 34986 ||||| || || ||||| ||||||||||| |||| Sbjct 452769 CCCGTTAGGGTTTTCACGAAGATCTGCATCTTCG 452736 >seq50758 Length=122349 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || || ||||| ||||| || || | ||| |||| | || || Sbjct 118473 AACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCGAGGGTTCGGCCGTCTTC 118414 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || ||||||||||| || || | |||||||||| | || | ||||||||||| Sbjct 118413 AAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGTGGAATACCCTCCTTGTCCTG 118354 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| |||||| | || | || | || || || | || |||||||| Sbjct 118353 AATCTTAGCCTTGACGTTGTCAATTGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTTTT 118294 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | |||||||||||| |||||||| Sbjct 118293 CCCAGTCAAAGTCTTCACAAAAATCTGCAT 118264 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| | | | |||||||||| || ||| ||||| ||||| ||||| | Sbjct 118034 CCTCCCCTAAGACGGAGCACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGCT 117975 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| ||| | || || ||||| |||||||| ||||| || | |||||||| | || Sbjct 117974 AGGGTTCTGCCGTCTTCGAGCTGCTTTCCGGCGAATATCAGCCTCTGCTGGTCCGGTGGA 117915 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||||| || ||| | || | || | ||||| Sbjct 117914 ATTCCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCAATAGTGTCGGAGCTTTCAACC 117855 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| || ||||| || || || || ||||||||||||||||| Sbjct 117854 TCAAGGGTGATTGTTTTACCGGTTAGGGTTTTCACAAAGATCTGCAT 117808 >seq3636 Length=134301 Score = 98.7 bits (108), Expect = 6e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| ||||||||| |||||||| || | |||| | || |||| |||||||| Sbjct 16286 GTGAAGGGTGGATTCTTTCTGGATGTTATAATCAGCAAGGGTACGACCATCCTCCAGCTG 16227 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || || ||||| || | | ||||| ||| | || | ||||||||||| |||||| Sbjct 16226 CTTACCAGCAAAAATCAACCTCTGCTGATCTGGTGGAATACCCTCCTTGTCCTGAATCTT 16167 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 ||| ||| | || | ||| | ||| || || | || || || || || || Sbjct 16166 TGCTTTCACGTTATCAATAGTATCAGAGCTCTCCACCTCCAAAGTGATAGTCTTCCCAGT 16107 Query 34958 GAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| ||||| |||||||| Sbjct 16106 TAGAGTCTTGACAAATATCTGCAT 16083 >seq37995 Length=189229 Score = 95.1 bits (104), Expect = 8e-15 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 34747 AATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTT 34804 |||||| ||||||| || | ||||||||||| ||||| ||| ||||||||| || || Sbjct 163976 AATCATAGTTCCTCCTCTGAGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATT 163917 Query 34805 ATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTG 34864 || || | || |||| |||| |||| ||||||||| ||||| || || | ||||| Sbjct 163916 GTAATCAGCCAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAGCCTCTGCTG 163857 Query 34865 GTCTTGCGGCACCCCCTCCTTGTC 34888 ||| | || | ||| || ||||| Sbjct 163856 GTCAGGAGGTATCCCTTCTTTGTC 163833 >seq32633 Length=132462 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||||| || ||| |||||||||||||| || | |||| | || |||| || Sbjct 60219 AACCAGGTGAAGAGTTGATTCCTTCTGAATGTTATAATCAGCAAGGGTACGACCATCCTC 60278 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || || ||||| || || | ||||||||| | || | || ||||| || Sbjct 60279 CAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGTGGAATACCTTCCTTATCCTG 60338 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| || ||| | || | || | ||| || || | ||| || || || Sbjct 60339 AATCTTTGCCTTCACGTTGTCAATAGTATCGGAGCTCTCTACCTCCAAGGTAATCGTCTT 60398 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| |||||||||||||| Sbjct 60399 CCCAGTCAGCGTCTTGACAAAGATCTGCAT 60428 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||||| | ||||| || | ||| |||||||| |||||||| || | | Sbjct 60430 CCTCCCCTCAACCGGAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTATAATCAGCA 60489 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | |||| || ||||| || || ||||| |||| || |||||||| | || Sbjct 60490 AGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATTAAACGCTGCTGGTCCGGGGGA 60549 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATT-CACCGG---CCTC 34930 | || || ||||| ||||| ||| || || |||| ||| | | | ||| Sbjct 60550 ATACCTTCTTTGTCTTGGATCTTTGCTTTCAC--AT--TATCAATTGTATCTGAACTCTC 60605 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | || || || || || || | ||||||||||||||||||||| Sbjct 60606 AACTTCCAGCGTGATTGTCTTCCCAGTCAACGTCTTCACAAAGATCTGCATA 60657 >seq48040 Length=167738 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 34748 ATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTA 34805 ||||| |||||||||| | ||||||||| | ||||| || ||||||||||||||| Sbjct 54789 ATCATAGTTCCTCCCCTGAGCCTCAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTG 54730 Query 34806 TAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGG 34865 || || | ||| | || |||| |||| |||||| || ||||| || |||| ||||| Sbjct 54729 TAATCAGCCAGGGTCCGCCCATCTTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGA 54670 Query 34866 TC 34867 || Sbjct 54669 TC 54668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324423400555584