Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq44697 150 2e-31 seq38302 141 1e-28 seq49945 96.9 4e-15 >seq44697 Length=182102 Score = 150 bits (166), Expect = 2e-31 Identities = 559/871 (64%), Gaps = 5/871 (1%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 |||||||| || ||||||| || |||||||||||||| || || | ||| || Sbjct 112980 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 113039 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||||||| ||||| | |||| || | || | | || || | | Sbjct 113040 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAAC 113099 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | |||||| || ||||||| ||| ||| || |||||| ||| | ||||||||| | | Sbjct 113100 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 113159 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | ||| || ||||| | ||| || |||||| | || || |||| | ||| Sbjct 113160 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 113219 Query 18910 GATACAACTCTATCTTCATTAGGAGG-GTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 ||||| || ||| || | || || | | || | |||||| ||||| Sbjct 113220 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAACTATAA-AGCAAACAAGCAAA 113278 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 |||||| || | || ||||| ||| || || || || || || ||||| |||||||| Sbjct 113279 ATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAGAAGGTTAATCCAGGCAT 113338 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 | || | ||||||||||||||||||| | ||| ||| || || || |||||||| Sbjct 113339 TAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTTCCGGAGAAAAAAATACCTTC 113398 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 || ||||| ||||| | | |||| || | | || | | ||||| Sbjct 113399 CACACAAGCAAATGCAACCAAAC--GCTCCGCAAAT-GTTTCGGAACCGTCGATCCAACG 113455 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 || ||||| | |||||||| | ||||| || || ||||| | | |||| Sbjct 113456 TAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATCT 113515 Query 19209 CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATG 19268 | || || | || || | || | |||| | | ||||||||| || || || Sbjct 113516 GCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGTG 113575 Query 19269 AATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 || ||||| || || || || || ||||| ||| | || || | | || ||||| Sbjct 113576 GATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGGACTTC 113635 Query 19329 ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388 | || ||| || | | ||||| ||| || || || || |||||||| || Sbjct 113636 TTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAAGGC 113695 Query 19389 TAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATC 19448 | || || | || ||||| ||||| | | |||| || | ||| | | |||| Sbjct 113696 AAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGTTATC 113755 Query 19449 TTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTT 19508 ||| ||||| ||||||||| | ||||| ||||| || |||||||| ||||| | Sbjct 113756 AGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTC 113815 Query 19509 CCATATATCACGATATTGTATAGGAAATATA 19539 ||| || | | ||||| || || || ||| Sbjct 113816 CCAAATTTGTGGGTATTGAATTGGGAACATA 113846 >seq38302 Length=59671 Score = 141 bits (156), Expect = 1e-28 Identities = 557/871 (64%), Gaps = 5/871 (1%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 |||||||| || ||||||| || |||||||||||||| || || | ||| || Sbjct 22800 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 22859 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||||||| ||||| | |||| || | || || | || || | | Sbjct 22860 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATTATAACCCAAAGCATCCAAC 22919 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | |||||| || ||||||| ||| ||| || |||||| ||| | ||||||||| | | Sbjct 22920 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 22979 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | ||| || ||||| | ||| || |||||| | || || |||| | ||| Sbjct 22980 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATC 23039 Query 18910 GATACAACTCTATCTTCATTAGGAGG-GTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 ||||| || ||| || | || || | | || | |||||| || || Sbjct 23040 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTCAACAAACTATAA-AGCAAACAAGCGAA 23098 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 |||||| || | || ||||| || || || || || || || ||||| |||||||| Sbjct 23099 ATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGCAT 23158 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 | || | ||||||||||||||||||| | ||| |||||| || || |||||||| Sbjct 23159 TAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTTCCAGAGAAAAAAATACCTTC 23218 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 || | ||| ||||| | | |||| || | | || | | ||||| Sbjct 23219 CACACAAGAAAATGCAACCAAAC--GCTCCGCAAAT-GTTTCGGAACCGTCGATCCAACG 23275 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 || ||||| | |||||||| | ||||| || || ||||| | | |||| Sbjct 23276 TAGGGCCCACTTCGCCTTCTTCTCAACACAGGGAATAGTCTCAACTGCGCGGAATAATCT 23335 Query 19209 CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATG 19268 | || || | || || | || | |||| | | ||||||||| || || || Sbjct 23336 GCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGTG 23395 Query 19269 AATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 || ||||| || || || || || ||||| ||| | || || | | || ||||| Sbjct 23396 GATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGGACTTC 23455 Query 19329 ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388 | || || || | | ||||| ||| || || || || |||||||| || Sbjct 23456 TTTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAAGGC 23515 Query 19389 TAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATC 19448 | || || | || ||||| ||||| | | |||| || | ||| | | |||| Sbjct 23516 AAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGGTATC 23575 Query 19449 TTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTT 19508 ||||||||| |||||||| | ||||| ||||| || |||||||| ||||| | Sbjct 23576 GGAAGATAAATCGACTTCTTCCGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTC 23635 Query 19509 CCATATATCACGATATTGTATAGGAAATATA 19539 ||| || | | ||||| || || || ||| Sbjct 23636 CCAAATTTGTGGGTATTGAATTGGGAACATA 23666 >seq49945 Length=41976 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| | |||||||||||||||||||||||| | |||||| | || | ||| | Sbjct 17068 AGTTCCAGCGTTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 17127 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 |||||| | || ||||| || ||||| | ||| || || || | |||||| | ||| | Sbjct 17128 ATATGTCTTGATGACAGATTCAATATCATCCTTG-TGGATCCCAACAGATACTCTCATCA 17186 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | ||| || ||||| |||| ||| | || || || || || || | || | Sbjct 17187 GCATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 17246 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 ||||| |||||||| || | || |||||| | |||| Sbjct 17247 GGGTTTTGAAACCAAAGTAATCATAATCAAAGTCTCTGTCAT 17288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561735503545920