Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq44697 150 2e-31
seq38302 141 1e-28
seq49945 96.9 4e-15
>seq44697
Length=182102
Score = 150 bits (166), Expect = 2e-31
Identities = 559/871 (64%), Gaps = 5/871 (1%)
Strand=Plus/Plus
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
|||||||| || ||||||| || |||||||||||||| || || | ||| ||
Sbjct 112980 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 113039
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789
||||| ||||||| ||||| | |||| || | || | | || || | |
Sbjct 113040 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAAC 113099
Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849
| |||||| || ||||||| ||| ||| || |||||| ||| | ||||||||| | |
Sbjct 113100 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 113159
Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909
| ||| || ||||| | ||| || |||||| | || || |||| | |||
Sbjct 113160 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 113219
Query 18910 GATACAACTCTATCTTCATTAGGAGG-GTATAGAAGATGTTTAAACATCAAACATGCAAA 18968
||||| || ||| || | || || | | || | |||||| |||||
Sbjct 113220 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAACTATAA-AGCAAACAAGCAAA 113278
Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028
|||||| || | || ||||| ||| || || || || || || ||||| ||||||||
Sbjct 113279 ATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAGAAGGTTAATCCAGGCAT 113338
Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088
| || | ||||||||||||||||||| | ||| ||| || || || ||||||||
Sbjct 113339 TAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTTCCGGAGAAAAAAATACCTTC 113398
Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148
|| ||||| ||||| | | |||| || | | || | | |||||
Sbjct 113399 CACACAAGCAAATGCAACCAAAC--GCTCCGCAAAT-GTTTCGGAACCGTCGATCCAACG 113455
Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208
|| ||||| | |||||||| | ||||| || || ||||| | | ||||
Sbjct 113456 TAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATCT 113515
Query 19209 CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATG 19268
| || || | || || | || | |||| | | ||||||||| || || ||
Sbjct 113516 GCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGTG 113575
Query 19269 AATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328
|| ||||| || || || || || ||||| ||| | || || | | || |||||
Sbjct 113576 GATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGGACTTC 113635
Query 19329 ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388
| || ||| || | | ||||| ||| || || || || |||||||| ||
Sbjct 113636 TTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAAGGC 113695
Query 19389 TAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATC 19448
| || || | || ||||| ||||| | | |||| || | ||| | | ||||
Sbjct 113696 AAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGTTATC 113755
Query 19449 TTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTT 19508
||| ||||| ||||||||| | ||||| ||||| || |||||||| ||||| |
Sbjct 113756 AGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTC 113815
Query 19509 CCATATATCACGATATTGTATAGGAAATATA 19539
||| || | | ||||| || || || |||
Sbjct 113816 CCAAATTTGTGGGTATTGAATTGGGAACATA 113846
>seq38302
Length=59671
Score = 141 bits (156), Expect = 1e-28
Identities = 557/871 (64%), Gaps = 5/871 (1%)
Strand=Plus/Plus
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
|||||||| || ||||||| || |||||||||||||| || || | ||| ||
Sbjct 22800 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 22859
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789
||||| ||||||| ||||| | |||| || | || || | || || | |
Sbjct 22860 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATTATAACCCAAAGCATCCAAC 22919
Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849
| |||||| || ||||||| ||| ||| || |||||| ||| | ||||||||| | |
Sbjct 22920 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 22979
Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909
| ||| || ||||| | ||| || |||||| | || || |||| | |||
Sbjct 22980 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATC 23039
Query 18910 GATACAACTCTATCTTCATTAGGAGG-GTATAGAAGATGTTTAAACATCAAACATGCAAA 18968
||||| || ||| || | || || | | || | |||||| || ||
Sbjct 23040 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTCAACAAACTATAA-AGCAAACAAGCGAA 23098
Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028
|||||| || | || ||||| || || || || || || || ||||| ||||||||
Sbjct 23099 ATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGCAT 23158
Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088
| || | ||||||||||||||||||| | ||| |||||| || || ||||||||
Sbjct 23159 TAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTTCCAGAGAAAAAAATACCTTC 23218
Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148
|| | ||| ||||| | | |||| || | | || | | |||||
Sbjct 23219 CACACAAGAAAATGCAACCAAAC--GCTCCGCAAAT-GTTTCGGAACCGTCGATCCAACG 23275
Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208
|| ||||| | |||||||| | ||||| || || ||||| | | ||||
Sbjct 23276 TAGGGCCCACTTCGCCTTCTTCTCAACACAGGGAATAGTCTCAACTGCGCGGAATAATCT 23335
Query 19209 CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATG 19268
| || || | || || | || | |||| | | ||||||||| || || ||
Sbjct 23336 GCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGTG 23395
Query 19269 AATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328
|| ||||| || || || || || ||||| ||| | || || | | || |||||
Sbjct 23396 GATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGGACTTC 23455
Query 19329 ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388
| || || || | | ||||| ||| || || || || |||||||| ||
Sbjct 23456 TTTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAAGGC 23515
Query 19389 TAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATC 19448
| || || | || ||||| ||||| | | |||| || | ||| | | ||||
Sbjct 23516 AAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGGTATC 23575
Query 19449 TTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTT 19508
||||||||| |||||||| | ||||| ||||| || |||||||| ||||| |
Sbjct 23576 GGAAGATAAATCGACTTCTTCCGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTC 23635
Query 19509 CCATATATCACGATATTGTATAGGAAATATA 19539
||| || | | ||||| || || || |||
Sbjct 23636 CCAAATTTGTGGGTATTGAATTGGGAACATA 23666
>seq49945
Length=41976
Score = 96.9 bits (106), Expect = 4e-15
Identities = 156/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658
|||||| | |||||||||||||||||||||||| | |||||| | || | ||| |
Sbjct 17068 AGTTCCAGCGTTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 17127
Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717
|||||| | || ||||| || ||||| | ||| || || || | |||||| | ||| |
Sbjct 17128 ATATGTCTTGATGACAGATTCAATATCATCCTTG-TGGATCCCAACAGATACTCTCATCA 17186
Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777
||| | ||| || ||||| |||| ||| | || || || || || || | || |
Sbjct 17187 GCATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 17246
Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819
||||| |||||||| || | || |||||| | ||||
Sbjct 17247 GGGTTTTGAAACCAAAGTAATCATAATCAAAGTCTCTGTCAT 17288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561735503545920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |