Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq44697 120 4e-22 seq38302 116 4e-21 >seq44697 Length=182102 Score = 120 bits (132), Expect = 4e-22 Identities = 365/561 (65%), Gaps = 11/561 (2%) Strand=Plus/Plus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| ||||||||||| || |||||||| || ||| || || || || || |||||| Sbjct 113268 AAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAGAAGGTT 113327 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAA 37291 ||||| |||||||| || | ||||| | ||| ||||| || |||||| ||| || || Sbjct 113328 AATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGC-ACAAAAGCTTCCGGAGAA 113386 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT---GAACTATA 37348 ||||||||||| || |||||||| || | ||| | || ||| |||| Sbjct 113387 AAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAAC---- 113442 Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408 | ||||| | | ||| | ||||| | |||||| || || |||| Sbjct 113443 --CGTCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAAC 113500 Query 37409 TGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468 ||| || | | ||||||| ||| || | || || | || | || | ||| Sbjct 113501 TGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACT 113560 Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 ||||| || ||||| || |||||||| || || || || || || ||| | || || Sbjct 113561 GTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTC 113620 Query 37529 AGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACT 37588 | | ||| || || || | ||||| |||| |||||| ||| || || || Sbjct 113621 GGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGA 113680 Query 37589 AGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTT 37648 || ||||| || ||||| || | | || ||||| |||||| | || || ||| Sbjct 113681 GGCGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTC 113740 Query 37649 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGC 37708 ||| | | |||| || ||||| ||||| ||| | ||||| ||| || || || Sbjct 113741 CCAGTGACGGTTATCAGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGC 113800 Query 37709 ACGTTTATACATCGTCCAAAT 37729 ||| ||||| |||||| Sbjct 113801 TTTTTTGTACATTTCCCAAAT 113821 >seq38302 Length=59671 Score = 116 bits (128), Expect = 4e-21 Identities = 364/561 (65%), Gaps = 11/561 (2%) Strand=Plus/Plus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| || |||||||| || |||||||| || || || || || || || || ||| Sbjct 23088 AAACAAGCGAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTT 23147 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAA 37291 ||||| |||||||| || | ||||| | ||| ||||| || |||||| | ||||| || Sbjct 23148 AATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCA-CAAAAGCTTCCAGAGAA 23206 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT---GAACTATA 37348 ||||||||||| || | |||||| || | ||| | || ||| |||| Sbjct 23207 AAAAATACCTTCCACACAAGAAAATGCAACCAAACGCTCCGCAAATGTTTCGGAAC---- 23262 Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408 | ||||| | | ||| | ||||| | |||||| ||| || |||| Sbjct 23263 --CGTCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGAATAGTCTCAAC 23320 Query 37409 TGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468 ||| || | | ||||||| ||| || | || || | || | || | ||| Sbjct 23321 TGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACT 23380 Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 ||||| || ||||| || |||||||| || || || || || || ||| | || || Sbjct 23381 GTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTC 23440 Query 37529 AGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACT 37588 | | ||| || || || | |||||| |||| |||||| ||| || || || Sbjct 23441 GGCAACTTGGACTTCTTTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCCGTCTGA 23500 Query 37589 AGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTT 37648 || ||||| || ||||| || | | || ||||| |||||| | || || ||| Sbjct 23501 GGCGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTC 23560 Query 37649 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGC 37708 ||| | | |||| |||||||| ||||| || | ||||| ||| || || || Sbjct 23561 CCAGTGACGGGTATCGGAAGATAAATCGACTTCTTCCGCAGTCCAGAAAGAGGCTAAGGC 23620 Query 37709 ACGTTTATACATCGTCCAAAT 37729 ||| ||||| |||||| Sbjct 23621 TTTTTTGTACATTTCCCAAAT 23641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591923442413120