Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq44697 120 4e-22
seq38302 116 4e-21
>seq44697
Length=182102
Score = 120 bits (132), Expect = 4e-22
Identities = 365/561 (65%), Gaps = 11/561 (2%)
Strand=Plus/Plus
Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232
||||| ||||||||||| || |||||||| || ||| || || || || || ||||||
Sbjct 113268 AAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAGAAGGTT 113327
Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAA 37291
||||| |||||||| || | ||||| | ||| ||||| || |||||| ||| || ||
Sbjct 113328 AATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGC-ACAAAAGCTTCCGGAGAA 113386
Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT---GAACTATA 37348
||||||||||| || |||||||| || | ||| | || ||| ||||
Sbjct 113387 AAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAAC---- 113442
Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408
| ||||| | | ||| | ||||| | |||||| || || ||||
Sbjct 113443 --CGTCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAAC 113500
Query 37409 TGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468
||| || | | ||||||| ||| || | || || | || | || | |||
Sbjct 113501 TGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACT 113560
Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528
||||| || ||||| || |||||||| || || || || || || ||| | || ||
Sbjct 113561 GTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTC 113620
Query 37529 AGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACT 37588
| | ||| || || || | ||||| |||| |||||| ||| || || ||
Sbjct 113621 GGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGA 113680
Query 37589 AGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTT 37648
|| ||||| || ||||| || | | || ||||| |||||| | || || |||
Sbjct 113681 GGCGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTC 113740
Query 37649 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGC 37708
||| | | |||| || ||||| ||||| ||| | ||||| ||| || || ||
Sbjct 113741 CCAGTGACGGTTATCAGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGC 113800
Query 37709 ACGTTTATACATCGTCCAAAT 37729
||| ||||| ||||||
Sbjct 113801 TTTTTTGTACATTTCCCAAAT 113821
>seq38302
Length=59671
Score = 116 bits (128), Expect = 4e-21
Identities = 364/561 (65%), Gaps = 11/561 (2%)
Strand=Plus/Plus
Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232
||||| || |||||||| || |||||||| || || || || || || || || |||
Sbjct 23088 AAACAAGCGAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTT 23147
Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAA 37291
||||| |||||||| || | ||||| | ||| ||||| || |||||| | ||||| ||
Sbjct 23148 AATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCA-CAAAAGCTTCCAGAGAA 23206
Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT---GAACTATA 37348
||||||||||| || | |||||| || | ||| | || ||| ||||
Sbjct 23207 AAAAATACCTTCCACACAAGAAAATGCAACCAAACGCTCCGCAAATGTTTCGGAAC---- 23262
Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408
| ||||| | | ||| | ||||| | |||||| ||| || ||||
Sbjct 23263 --CGTCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGAATAGTCTCAAC 23320
Query 37409 TGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468
||| || | | ||||||| ||| || | || || | || | || | |||
Sbjct 23321 TGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACT 23380
Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528
||||| || ||||| || |||||||| || || || || || || ||| | || ||
Sbjct 23381 GTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTC 23440
Query 37529 AGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACT 37588
| | ||| || || || | |||||| |||| |||||| ||| || || ||
Sbjct 23441 GGCAACTTGGACTTCTTTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCCGTCTGA 23500
Query 37589 AGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTT 37648
|| ||||| || ||||| || | | || ||||| |||||| | || || |||
Sbjct 23501 GGCGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTC 23560
Query 37649 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGC 37708
||| | | |||| |||||||| ||||| || | ||||| ||| || || ||
Sbjct 23561 CCAGTGACGGGTATCGGAAGATAAATCGACTTCTTCCGCAGTCCAGAAAGAGGCTAAGGC 23620
Query 37709 ACGTTTATACATCGTCCAAAT 37729
||| ||||| ||||||
Sbjct 23621 TTTTTTGTACATTTCCCAAAT 23641
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 591923442413120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |