Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq50758 102 7e-17
seq51452 98.7 8e-16
>seq50758
Length=122349
Score = 102 bits (112), Expect = 7e-17
Identities = 147/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| || ||||| ||||| || || || |||||||| || || |||| |||
Sbjct 118720 ATGCAGATTTTTGTGAAAACGTTGACCGGGAAAACCATCACTTTGGAGGTGGAAAGTTCT 118779
Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672
|| || | | | || | || || || | || ||||| ||||| | ||| |||||
Sbjct 118780 GATACTATTGACAATGTGAAAGCTAAGATTCAG-GACAAGGAGGGTATTCCCCCGGATCA 118838
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732
||||| || ||||||||||| || |||||||||||| | ||| |||| ||||||||
Sbjct 118839 GCAGAGGCTGATCTTTGCGGGGAAGCAATTGGAAGATGGAAGGACTCTGGCTGATTATAA 118898
Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757
||||| || || || || ||||||
Sbjct 118899 TATTCAGAAGGAGTCCACCCTGCAC 118923
>seq51452
Length=252770
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612
||||||||| ||||| ||||| |||||||| |||||||| || ||| || ||
Sbjct 4066 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 4007
Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672
||| ||| | | | || | ||| ||| || || || ||||| | || ||| ||
Sbjct 4006 AGACACGATTGACAATGTGAAGGCAAAGATTCAGGATAAGGAGGGCATTCCACCAGACCA 3947
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732
||||| ||||||||||| || || || ||||| ||| || || | || ||||| ||
Sbjct 3946 GCAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCTGATTACAA 3887
Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756
||||| || || |||||||| ||
Sbjct 3886 TATTCAGAAGGAGTCTACTCTCCA 3863
Score = 86.0 bits (94), Expect = 5e-12
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612
||||||||| ||||| || || ||||| || ||||| || || ||| || ||
Sbjct 58899 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 58840
Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672
|| ||| | | | || | ||| ||||| ||||| ||||| | || |||||
Sbjct 58839 GGACACGATAGACAATGTTAAGTCTAAAATTCAAGACAAGGAGGGTATCCCACCTGATCA 58780
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732
||||| | || ||||| || || ||||| |||||| | |||| |||| ||||||||
Sbjct 58779 GCAGAGGTTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATAA 58720
Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757
||| || || ||||| || || |||
Sbjct 58719 CATCCAGAAGGAATCAACCCTTCAC 58695
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| || ||||| || || |||||||| || || || || ||| ||| |||
Sbjct 4293 ATGCAGATCTTTGTGAAGACGTTAACGGGGAAGACGATCACGTTGGAAGTGGAGAGTTCT 4234
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | | || | ||| || || || || ||||| | || ||| ||
Sbjct 4233 GATACCATTGACAATGTGAAGGCCAAGATACAGGATAAGGAGGGTATCCCACCAGACCAG 4174
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
|||||||| || ||||| || ||||||||||||||| | ||| | || || ||||||
Sbjct 4173 CAGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGGGAGGACTCTTGCTGACTATAAC 4114
Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757
|||||||| || || || || |||
Sbjct 4113 ATTCAAAAGGAGTCAACACTCCAC 4090
Score = 82.4 bits (90), Expect = 6e-11
Identities = 141/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612
||||||||| ||||| || || ||||| || ||||| || || ||| || ||
Sbjct 58443 AATGCAAATCTTTGTTAAGACCTTAACTGGGAAAACAATCACATTGGAAGTTGAGAGCTC 58384
Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672
|| ||| | | | || | ||| |||||| ||||| || || | || |||||
Sbjct 58383 GGACACGATTGACAATGTTAAGGCAAAAATTCAAGACAAGGAAGGCATCCCACCGGATCA 58324
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732
|| || || || ||||| || || |||||||||||| | ||| | || || |||||
Sbjct 58323 GCAAAGGCTGATATTTGCAGGAAAGCAATTGGAAGATGGGAGGACTCTTGCTGACTATAA 58264
Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757
||||||||| || || || || |||
Sbjct 58263 CATTCAAAAGGAGTCAACACTCCAC 58239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425129351455512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |