Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq50758 102 7e-17 seq51452 98.7 8e-16 >seq50758 Length=122349 Score = 102 bits (112), Expect = 7e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| || || || |||||||| || || |||| ||| Sbjct 118720 ATGCAGATTTTTGTGAAAACGTTGACCGGGAAAACCATCACTTTGGAGGTGGAAAGTTCT 118779 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | || || || | || ||||| ||||| | ||| ||||| Sbjct 118780 GATACTATTGACAATGTGAAAGCTAAGATTCAG-GACAAGGAGGGTATTCCCCCGGATCA 118838 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || ||||||||||| || |||||||||||| | ||| |||| |||||||| Sbjct 118839 GCAGAGGCTGATCTTTGCGGGGAAGCAATTGGAAGATGGAAGGACTCTGGCTGATTATAA 118898 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 ||||| || || || || |||||| Sbjct 118899 TATTCAGAAGGAGTCCACCCTGCAC 118923 >seq51452 Length=252770 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| |||||||| |||||||| || ||| || || Sbjct 4066 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 4007 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| ||| | | | || | ||| ||| || || || ||||| | || ||| || Sbjct 4006 AGACACGATTGACAATGTGAAGGCAAAGATTCAGGATAAGGAGGGCATTCCACCAGACCA 3947 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| ||||||||||| || || || ||||| ||| || || | || ||||| || Sbjct 3946 GCAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCTGATTACAA 3887 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 ||||| || || |||||||| || Sbjct 3886 TATTCAGAAGGAGTCTACTCTCCA 3863 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || ||||| || ||||| || || ||| || || Sbjct 58899 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 58840 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | || | ||| ||||| ||||| ||||| | || ||||| Sbjct 58839 GGACACGATAGACAATGTTAAGTCTAAAATTCAAGACAAGGAGGGTATCCCACCTGATCA 58780 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| | || ||||| || || ||||| |||||| | |||| |||| |||||||| Sbjct 58779 GCAGAGGTTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATAA 58720 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 ||| || || ||||| || || ||| Sbjct 58719 CATCCAGAAGGAATCAACCCTTCAC 58695 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || |||||||| || || || || ||| ||| ||| Sbjct 4293 ATGCAGATCTTTGTGAAGACGTTAACGGGGAAGACGATCACGTTGGAAGTGGAGAGTTCT 4234 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| || || || || ||||| | || ||| || Sbjct 4233 GATACCATTGACAATGTGAAGGCCAAGATACAGGATAAGGAGGGTATCCCACCAGACCAG 4174 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||| || ||||| || ||||||||||||||| | ||| | || || |||||| Sbjct 4173 CAGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGGGAGGACTCTTGCTGACTATAAC 4114 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 |||||||| || || || || ||| Sbjct 4113 ATTCAAAAGGAGTCAACACTCCAC 4090 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || ||||| || ||||| || || ||| || || Sbjct 58443 AATGCAAATCTTTGTTAAGACCTTAACTGGGAAAACAATCACATTGGAAGTTGAGAGCTC 58384 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | || | ||| |||||| ||||| || || | || ||||| Sbjct 58383 GGACACGATTGACAATGTTAAGGCAAAAATTCAAGACAAGGAAGGCATCCCACCGGATCA 58324 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || || || || ||||| || || |||||||||||| | ||| | || || ||||| Sbjct 58323 GCAAAGGCTGATATTTGCAGGAAAGCAATTGGAAGATGGGAGGACTCTTGCTGACTATAA 58264 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 ||||||||| || || || || ||| Sbjct 58263 CATTCAAAAGGAGTCAACACTCCAC 58239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425129351455512