Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq49814 111 2e-19 seq2125 111 2e-19 seq49945 96.9 4e-15 seq37818 93.3 5e-14 >seq49814 Length=37993 Score = 111 bits (122), Expect = 2e-19 Identities = 246/366 (67%), Gaps = 6/366 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || || ||||| | || || || ||||| || ||| || | || |||||| Sbjct 32300 CCAGGGACAGGGAAGACATTGCTGGCTAAGGCGATCGCCGGGGAAGCAGAGGTTCCATTC 32241 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | ||||| || | || | |||||||||||||||||||| || || ||| Sbjct 32240 TTTTCTCTCTCTGGTTCAGAGTTCATTGAGATGTTTGTTGGTGTGGGAGCTTCTAGAGTT 32181 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 | || | || | | || ||||| ||| ||| | ||||| |||||||||||| Sbjct 32180 AGGGACTTATTCAACAAGGCAAAGCAAAATTCACCTTGTTTAGTCTTTATTGATGAGATT 32121 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAA 175554 ||||| || || | |||| | | ||||| | | |||||| || ||||| || Sbjct 32120 GATGCTGTTGGGAGGCAAAGAGGAACTGGTATTGGTGGTGGAAATGATGAAAGAGAGCAG 32061 Query 175555 ACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC---AATGAGACTGGCATTGTG 175611 ||| |||| ||||| |||||||| |||||||| ||| || || | ||||| | | Sbjct 32060 ACACTTAACCAACTTCTCACCGAAATGGATGG-TTTCACTGGAA--ACACTGGAGTCATT 32004 Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGT 175671 || ||||| || |||||| | || || |||||| | || | ||| | || || | Sbjct 32003 GTCATTGCTGCTACTAATAGGCCTGAAATTCTTGATCAAGCTTTGCTTAGACCTGGAAGA 31944 Query 175672 TTTGAT 175677 |||||| Sbjct 31943 TTTGAT 31938 >seq2125 Length=154978 Score = 111 bits (122), Expect = 2e-19 Identities = 302/454 (67%), Gaps = 14/454 (3%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAG-ATCCC 175289 ||| | || || ||| | ||| | |||||||| | | || | |||| | | | || || Sbjct 126035 GAGGTCGTAGAATTTTTGAAGAAGCCCGAGAGGTTTACTGCA-GTGGGGGCTCGTATTCC 125977 Query 175290 CCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCAT 175349 ||| | ||||| | ||| || ||||| || |||||||| || || || || Sbjct 125976 AAAAGGTGTTCTTCTTGTTGGTCCTCCGGGTACTGGGAAGACCCTGCTAGCAAAGGCAAT 125917 Query 175350 CGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || |||||| | ||| ||||| || || | || | || | ||||| ||||||| Sbjct 125916 TGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATT-TCAGGTTCAGAATTTGTTGAGATGT 125858 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||||||||| || ||| | || || ||||| || | | ||| |||||| | Sbjct 125857 TTGTTGGTGTTGGAGCCTCTCGAGTACGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTC 125798 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGG 175526 | || ||||| || ||||||| |||||||| || || |||| | | |||| | | Sbjct 125797 CTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTG 125738 Query 175527 TATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGG 175586 | | || ||||| || || ||||| || | || |||||| | || || ||||| || Sbjct 125737 GAGG--AGGGAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACAGAAATGGACGG 125680 Query 175587 CTTTGA---CAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCT 175643 || || |||| ||||| || | ||| ||||||| || ||||| | ||||| || Sbjct 125679 TTTCGAAGGCAAT---ACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCT 125623 Query 175644 TGATGACGCCCTCCTTCGCCCGGGTCGTTTTGAT 175677 ||| || | ||| | || || || |||||| Sbjct 125622 TGACTCTGCTTTGCTTAGACCAGGGCGATTTGAT 125589 >seq49945 Length=41976 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCT 75189 |||| ||||| || |||||||||| ||||||||||||||| | || || | || | | Sbjct 17280 GACTTTGATTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCTTACCTCTTAAAGATT 17221 Query 75190 CGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCA 75249 | | || | | | |||| ||||| ||||| | ||| | || | | || ||||| Sbjct 17220 C-AGGGTAAAGTTGTAGAAAGGCCACAACACATGCTGATGAGAGTATCTGTTGGGATCCA 17162 Query 75250 CGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 75309 | ||| || ||||| |||||| | ||||||| | |||||| ||| | ||||| Sbjct 17161 CAAGGATGATATTGAATCTGTCATCAAGACATATCATTTGATGTCTCAACGATGGTTCAC 17102 Query 75310 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 ||| ||| | ||||| | || || ||||| || |||||||| || Sbjct 17101 TCATGCATCTCCAACATTATTTAACGCTGGAACTCCAAGACCTCA 17057 >seq37818 Length=88620 Score = 93.3 bits (102), Expect = 5e-14 Identities = 190/278 (68%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| || ||||| || | || |||| | || ||||| || ||| ||||| Sbjct 61864 CCTGGTACTGGTAAGACACTTTTGGCAAGAGCAGTAGCTGGTGAGGCAGGTGTGCCATTT 61923 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | || || | ||||| ||| ||||||| |||||||| || || || Sbjct 61924 TTCTCATGTGCAGCATCAGAGTTTGTTGAGTTGTTTGTCGGTGTGGGAGCTTCTAGAGTA 61983 Query 175435 CGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | ||| | ||||| | || | ||| | || |||||||| || ||||||||||| Sbjct 61984 AGGGATTTGTTTGAGAAGGCGAAGTCGAAAGCG-CCTTGTATTGTGTTTATTGATGAGAT 62042 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAA 175551 |||||| || || | |||| | | || || | | | | | |||||| |||||||| Sbjct 62043 TGATGCTGTTGGAAGGCAAAGAGGGGCAGGACTTGGAGG--TGGAAATGATGAGAGAGAG 62100 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 || || |||||||| || | || || |||||||| || Sbjct 62101 CAGACGATTAATCAGCTGTTGACAGAAATGGATGGGTT 62138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596173418128640