Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq32633 147 4e-30 seq51452 114 2e-20 seq48356 95.1 2e-14 seq3636 95.1 2e-14 seq50758 89.7 9e-13 >seq32633 Length=132462 Score = 147 bits (162), Expect = 4e-30 Identities = 174/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| |||| | || |||||||||| || | || || |||||| Sbjct 60877 ATTTGCATACCACCCCTCAGCCTCAGCACCAGATGCAGAGTGGATTCCTTCTGAATATTG 60936 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | || | | ||| || | ||| ||||| ||||| || || ||||| ||| Sbjct 60937 TAGTCAGCAAGAGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGA 60996 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||||||||| || ||||| | ||| | ||| ||| ||||||||| Sbjct 60997 TCTGGAGGAATGCCTTCTTTATCCTGGATTTTAGCTTTGACATTGTCAATTGTATCGGAA 61056 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || || || ||||| || ||||| | ||||||||||| || ||||| Sbjct 61057 CTCTCAACCTCAAGGGTAATAGTCTTTCCTGTCAAAGTTTTTACAAAGATCTGCAT 61112 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || || ||||| || || |||| ||| | || | |||||| || ||||| || Sbjct 60427 ATCCCTCCCCTCAACCGGAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTATAATCA 60486 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | || || || ||||||||||| | ||| || || || Sbjct 60487 GCAAGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATTAAACGCTGCTGGTCCGGG 60546 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| || || | ||| | ||| ||| ||||| ||| |||| Sbjct 60547 GGAATACCTTCTTTGTCTTGGATCTTTGCTTTCACATTATCAATTGTATCTGAACTCTCA 60606 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || | ||| || ||||| || ||||| Sbjct 60607 ACTTCCAGCGTGATTGTCTTCCCAGTCAACGTCTTCACAAAGATCTGCAT 60656 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | ||| || || || || || | || | ||| || || || ||||| Sbjct 61111 ATACCACCACGCAAACGGAGAACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCA 61170 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| || | ||| ||||| ||||| || || || || ||||| ||| Sbjct 61171 GCAAGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGCTGATCCGGA 61230 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || || | || | ||| ||| || || || |||| Sbjct 61231 GGAATACCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATTGTGTCTGAGCTCTCA 61290 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || || |||| ||||||||||| || ||||| Sbjct 61291 ACCTCGAGAGTGATAGTCTTCCCAGTTAAAGTTTTTACAAAGATCTGCAT 61340 >seq51452 Length=252770 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| ||||| | || || ||||| | |||| ||| || ||||| ||||| | Sbjct 57988 CCACCCCTCAACCTCAGCACAAGATGGAGAGTAGACTCCTTCTGGATATTGTAGTCCGCC 58047 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || ||| ||| || || |||||||| ||||| || | ||||| || || || || Sbjct 58048 AGTGTCCTACCATCCTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGCGGA 58107 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || ||||||||||| ||||| || | || | ||| ||| || || || ||||||| Sbjct 58108 ATACCTTCTTTATCCTGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAACT 58167 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || | || || || || || |||| ||||| ||||| ||||||||| Sbjct 58168 TCCAATGTGATGGTCTTTCCCGTTAAGGTTTTAACAAAGATTTGCATT 58215 Score = 111 bits (122), Expect = 3e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||||| || || || || | || | || || || ||||| || Sbjct 4292 ATGCCACCTCTCAATCTGAGAACTAGGTGAAGGGTGGATTCCTTCTGGATGTTATAATCA 4351 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | |||||| ||| |||||||| || || || ||||| | ||||| || || || Sbjct 4352 GCCAGCGTTCTTCCATCTTCTAATTGCTTCCCAGCGAAAATCAGCCTCTGCTGGTCTGGC 4411 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 | || ||||| |||||||| ||||| | || | ||| ||| || || || |||| Sbjct 4412 GCGATACCTTCCTTATCTTGGATTTTCGCCTTAACATTATCAATTGTGTCCGAGCTCTCA 4471 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| | || || ||||| || |||| ||||| ||||| ||||||||| Sbjct 4472 ACTTCCAATGTAATGGTTTTCCCGGTTAAGGTTTTAACAAAGATTTGCATT 4522 Score = 96.9 bits (106), Expect = 6e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| |||| | || || ||||| | |||| ||| || |||||| || || | Sbjct 3839 CCACCCCTCAGCCTCAGCACAAGATGGAGAGTAGACTCCTTCTGAATATTGTAATCAGCA 3898 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || ||| ||| || || || || || ||||| || | ||||| || || || || Sbjct 3899 AGTGTCCTACCATCCTCCAACTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGA 3958 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || || ||||| || || || | || | ||| ||| || || || ||||||| Sbjct 3959 ATGCCCTCCTTATCCTGAATCTTTGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAACT 4018 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||| || || ||||| || |||| ||||| ||||| ||||||||| Sbjct 4019 TCTAATGTGATGGTTTTTCCCGTTAAGGTTTTAACAAAGATTTGCATT 4066 Score = 87.8 bits (96), Expect = 3e-12 Identities = 167/245 (68%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| || | | || || || || | || | ||| || |||||| Sbjct 4741 AATTTGCATTCCACCCCTTAGCCTGAGAACTAGGTGGAGAGTTGACTCCTTTTGAATATT 4800 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || | | || | ||| || | ||| || || ||||| || | ||||| || Sbjct 4801 ATAATCTGCGAGAGTACGCCCATCTTCCAGTTGCTTCCCTGCAAATATCAGCCTCTGCTG 4860 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || || || || ||||||||||| | || | ||| || || || || Sbjct 4861 ATCCGGTGGGATACCCTCCTTGTCTTGTATTTTCGCCTTAACATTGTCTATGGTGTCCGA 4920 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT-TT 193362 |||||||| || || || ||||| || ||||| ||||| ||||| || ||||| | Sbjct 4921 GCTTTCAACTTCCAGTGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAGATCTGCATCTG 4980 Query 193363 TATTA 193367 ||||| Sbjct 4981 TATTA 4985 >seq48356 Length=183133 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316 |||||||| ||||||||||||| ||| | ||| || ||||| || |||||||| Sbjct 106515 CCTTCTTTGTCTTGTATTTTGGCTTTAACATTGTCGATTGTATCACTGGATTCAACTTCG 106456 Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||||||| |||||||| || || ||||| || ||||| |||||||| Sbjct 106455 AGAGTTATGGTTTTACCAGTGAGAGTTTTCACGAATATCTGCATTTT 106409 >seq3636 Length=134301 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || || ||||| || || |||| |||||| || | |||||| ||||| || || Sbjct 16084 ATCCCTCCCCTCAAACGGAGCACCAAATGCAACGTGGACTCTTTCTGGATATTGTAATCA 16025 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | || || || ||||| || |||| ||| ||||| || Sbjct 16024 GCAAGGGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGT 15965 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||||||||| || || | |||| || ||| ||||| ||| || Sbjct 15964 GGAATCCCTTCTTTATCTTGGATCTTCGCCTTTACGTTATCAATTGTATCAGAACTTTCG 15905 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | || || || || ||||| | || || ||||| || ||||| Sbjct 15904 ACCTCCAAGGTGATCGTCTTCCCTGTCAATGTCTTCACAAAGATCTGCAT 15855 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||| ||||| || || ||||| ||||| ||||| || ||||| || || || || Sbjct 15544 TGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATC 15485 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | || | ||| ||| || ||||| |||||| || || || || || || || Sbjct 15484 TTCGCCTTCACATTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTCTTCCCG 15425 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || | ||||||||||| || ||||| Sbjct 15424 GTCAATGTTTTTACAAAAATCTGCAT 15399 >seq50758 Length=122349 Score = 89.7 bits (98), Expect = 9e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 |||||||| || | ||| ||||| ||| || || || || || ||||| || || ||| Sbjct 118673 ATATTATAATCAGCTAAAGTTCTCCCATCTTCCAACTGCTTACCAGCAAAGATCAACCTC 118614 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || || || || || || || || || || || | || | ||| ||||||| Sbjct 118613 TGCTGGTCTGGTGGGATACCCTCCTTGTCCTGAATCTTCGCCTTAACATTGTCAATAGTA 118554 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||| || ||||| || || ||||| || || || || ||||| || || || ||| Sbjct 118553 TCGGAGCTTTCGACTTCGAGGGTGATAGTCTTCCCAGTGAGTGTTTTGACGAAGATCTGC 118494 Query 193359 AT 193360 || Sbjct 118493 AT 118492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899056939512960