Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq32633 147 4e-30
seq51452 114 2e-20
seq48356 95.1 2e-14
seq3636 95.1 2e-14
seq50758 89.7 9e-13
>seq32633
Length=132462
Score = 147 bits (162), Expect = 4e-30
Identities = 174/236 (74%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| |||||||| |||| | || |||||||||| || | || || ||||||
Sbjct 60877 ATTTGCATACCACCCCTCAGCCTCAGCACCAGATGCAGAGTGGATTCCTTCTGAATATTG 60936
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
||||| | | || | | ||| || | ||| ||||| ||||| || || ||||| |||
Sbjct 60937 TAGTCAGCAAGAGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGA 60996
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| ||||| || ||||||||||| || ||||| | ||| | ||| ||| |||||||||
Sbjct 60997 TCTGGAGGAATGCCTTCTTTATCCTGGATTTTAGCTTTGACATTGTCAATTGTATCGGAA 61056
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||| || || || ||||| || ||||| | ||||||||||| || |||||
Sbjct 61057 CTCTCAACCTCAAGGGTAATAGTCTTTCCTGTCAAAGTTTTTACAAAGATCTGCAT 61112
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| || || ||||| || || |||| ||| | || | |||||| || ||||| ||
Sbjct 60427 ATCCCTCCCCTCAACCGGAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTATAATCA 60486
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | || || ||| || | || || || ||||||||||| | ||| || || ||
Sbjct 60487 GCAAGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATTAAACGCTGCTGGTCCGGG 60546
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || |||||||| ||||| || || | ||| | ||| ||| ||||| ||| ||||
Sbjct 60547 GGAATACCTTCTTTGTCTTGGATCTTTGCTTTCACATTATCAATTGTATCTGAACTCTCA 60606
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| || || || || || || || | ||| || ||||| || |||||
Sbjct 60607 ACTTCCAGCGTGATTGTCTTCCCAGTCAACGTCTTCACAAAGATCTGCAT 60656
Score = 100 bits (110), Expect = 5e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| | ||| || || || || || | || | ||| || || || |||||
Sbjct 61111 ATACCACCACGCAAACGGAGAACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCA 61170
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | || | | ||| || | ||| ||||| ||||| || || || || ||||| |||
Sbjct 61171 GCAAGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGCTGATCCGGA 61230
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || ||||| || || || || || | || | ||| ||| || || || ||||
Sbjct 61231 GGAATACCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATTGTGTCTGAGCTCTCA 61290
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||| ||||| || || |||| ||||||||||| || |||||
Sbjct 61291 ACCTCGAGAGTGATAGTCTTCCCAGTTAAAGTTTTTACAAAGATCTGCAT 61340
>seq51452
Length=252770
Score = 114 bits (126), Expect = 2e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193
||||| ||||| | || || ||||| | |||| ||| || ||||| ||||| |
Sbjct 57988 CCACCCCTCAACCTCAGCACAAGATGGAGAGTAGACTCCTTCTGGATATTGTAGTCCGCC 58047
Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253
| || ||| ||| || || |||||||| ||||| || | ||||| || || || ||
Sbjct 58048 AGTGTCCTACCATCCTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGCGGA 58107
Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313
|| ||||||||||| ||||| || | || | ||| ||| || || || |||||||
Sbjct 58108 ATACCTTCTTTATCCTGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAACT 58167
Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| | || || || || || |||| ||||| ||||| |||||||||
Sbjct 58168 TCCAATGTGATGGTCTTTCCCGTTAAGGTTTTAACAAAGATTTGCATT 58215
Score = 111 bits (122), Expect = 3e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| ||||||||||||| || || || || | || | || || || ||||| ||
Sbjct 4292 ATGCCACCTCTCAATCTGAGAACTAGGTGAAGGGTGGATTCCTTCTGGATGTTATAATCA 4351
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | |||||| ||| |||||||| || || || ||||| | ||||| || || ||
Sbjct 4352 GCCAGCGTTCTTCCATCTTCTAATTGCTTCCCAGCGAAAATCAGCCTCTGCTGGTCTGGC 4411
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
| || ||||| |||||||| ||||| | || | ||| ||| || || || ||||
Sbjct 4412 GCGATACCTTCCTTATCTTGGATTTTCGCCTTAACATTATCAATTGTGTCCGAGCTCTCA 4471
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
||||| | || || ||||| || |||| ||||| ||||| |||||||||
Sbjct 4472 ACTTCCAATGTAATGGTTTTCCCGGTTAAGGTTTTAACAAAGATTTGCATT 4522
Score = 96.9 bits (106), Expect = 6e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193
||||| |||| | || || ||||| | |||| ||| || |||||| || || |
Sbjct 3839 CCACCCCTCAGCCTCAGCACAAGATGGAGAGTAGACTCCTTCTGAATATTGTAATCAGCA 3898
Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253
| || ||| ||| || || || || || ||||| || | ||||| || || || ||
Sbjct 3899 AGTGTCCTACCATCCTCCAACTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGA 3958
Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313
|| || || ||||| || || || | || | ||| ||| || || || |||||||
Sbjct 3959 ATGCCCTCCTTATCCTGAATCTTTGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAACT 4018
Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|||| || || ||||| || |||| ||||| ||||| |||||||||
Sbjct 4019 TCTAATGTGATGGTTTTTCCCGTTAAGGTTTTAACAAAGATTTGCATT 4066
Score = 87.8 bits (96), Expect = 3e-12
Identities = 167/245 (68%), Gaps = 1/245 (0%)
Strand=Plus/Plus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||||| || ||||| || | | || || || || | || | ||| || ||||||
Sbjct 4741 AATTTGCATTCCACCCCTTAGCCTGAGAACTAGGTGGAGAGTTGACTCCTTTTGAATATT 4800
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
||| || | | || | ||| || | ||| || || ||||| || | ||||| ||
Sbjct 4801 ATAATCTGCGAGAGTACGCCCATCTTCCAGTTGCTTCCCTGCAAATATCAGCCTCTGCTG 4860
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
||| || || || || || || ||||||||||| | || | ||| || || || ||
Sbjct 4861 ATCCGGTGGGATACCCTCCTTGTCTTGTATTTTCGCCTTAACATTGTCTATGGTGTCCGA 4920
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT-TT 193362
|||||||| || || || ||||| || ||||| ||||| ||||| || ||||| |
Sbjct 4921 GCTTTCAACTTCCAGTGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAGATCTGCATCTG 4980
Query 193363 TATTA 193367
|||||
Sbjct 4981 TATTA 4985
>seq48356
Length=183133
Score = 95.1 bits (104), Expect = 2e-14
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316
|||||||| ||||||||||||| ||| | ||| || ||||| || ||||||||
Sbjct 106515 CCTTCTTTGTCTTGTATTTTGGCTTTAACATTGTCGATTGTATCACTGGATTCAACTTCG 106456
Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|||||||| |||||||| || || ||||| || ||||| ||||||||
Sbjct 106455 AGAGTTATGGTTTTACCAGTGAGAGTTTTCACGAATATCTGCATTTT 106409
>seq3636
Length=134301
Score = 95.1 bits (104), Expect = 2e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| || || ||||| || || |||| |||||| || | |||||| ||||| || ||
Sbjct 16084 ATCCCTCCCCTCAAACGGAGCACCAAATGCAACGTGGACTCTTTCTGGATATTGTAATCA 16025
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | || || ||| || | || || || ||||| || |||| ||| ||||| ||
Sbjct 16024 GCAAGGGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGT 15965
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || |||||||||||||| || || | |||| || ||| ||||| ||| ||
Sbjct 15964 GGAATCCCTTCTTTATCTTGGATCTTCGCCTTTACGTTATCAATTGTATCAGAACTTTCG 15905
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || | || || || || ||||| | || || ||||| || |||||
Sbjct 15904 ACCTCCAAGGTGATCGTCTTCCCTGTCAATGTCTTCACAAAGATCTGCAT 15855
Score = 84.2 bits (92), Expect = 4e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| ||||| ||||| || || ||||| ||||| ||||| || ||||| || || || ||
Sbjct 15544 TGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATC 15485
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|| | || | ||| ||| || ||||| |||||| || || || || || || ||
Sbjct 15484 TTCGCCTTCACATTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTCTTCCCG 15425
Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360
|| | ||||||||||| || |||||
Sbjct 15424 GTCAATGTTTTTACAAAAATCTGCAT 15399
>seq50758
Length=122349
Score = 89.7 bits (98), Expect = 9e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238
|||||||| || | ||| ||||| ||| || || || || || ||||| || || |||
Sbjct 118673 ATATTATAATCAGCTAAAGTTCTCCCATCTTCCAACTGCTTACCAGCAAAGATCAACCTC 118614
Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298
|| || || || || || || || || || || || || | || | ||| |||||||
Sbjct 118613 TGCTGGTCTGGTGGGATACCCTCCTTGTCCTGAATCTTCGCCTTAACATTGTCAATAGTA 118554
Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358
||||| || ||||| || || ||||| || || || || ||||| || || || |||
Sbjct 118553 TCGGAGCTTTCGACTTCGAGGGTGATAGTCTTCCCAGTGAGTGTTTTGACGAAGATCTGC 118494
Query 193359 AT 193360
||
Sbjct 118493 AT 118492
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899056939512960
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