Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq49814 165 2e-35 seq37818 159 1e-33 seq9544 145 2e-29 seq31771 131 5e-25 seq50128 125 2e-23 seq2125 125 2e-23 seq51953 113 1e-19 seq39264 89.7 2e-12 >seq49814 Length=37993 Score = 165 bits (182), Expect = 2e-35 Identities = 288/413 (70%), Gaps = 6/413 (1%) Strand=Plus/Plus Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || |||||||| || | || ||| |||||||| || || |||||||||||| ||| Sbjct 32026 AAACCATCCATTTCGGTGAGAAGTTGGTTAAGTGTCTGCTCTCTTTCATCATTTCCACCA 32085 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 | ||| ||| | || ||| ||| | |||||||||||||| || ||||| || | Sbjct 32086 CC--AAT-ACCAGT-TC-CTC-TTTGCCTCCCAACAGCATCAATCTCATCAATAAAGACT 32139 Query 289060 ACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGA 289119 | ||| || |||||||| | || | ||||| || || || | || ||||| | | Sbjct 32140 AAACAAGGTGAATTTTGCTTTGCCTTGTTGAATAAGTCCCTAACTCTAGAAGCTCCCACA 32199 Query 289120 CCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCG 289179 |||||| |||| || | || || ||| | || | || ||||| || | |||||| Sbjct 32200 CCAACAAACATCTCAATGAACTCTGAACCAGAGAGAGAAAAGAATGGAACCTCTGCTTCC 32259 Query 289180 CCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACT 289239 || || | ||| | ||||| | |||||| ||||| || ||||| || |||| |||||| Sbjct 32260 CCGGCGATCGCCTTAGCCAGCAATGTCTTCCCTGTCCCTGGTGGCCCTACTAAGAGAACT 32319 Query 289240 CCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACA 289299 |||||||||| ||||||||| | | | | || || ||| | || || || || ||| Sbjct 32320 CCCTTTGGTATCTTTGCCCCAACTGCTGCAAACTTTTCTGGGGTTTTCAAGAACTCAACA 32379 Query 289300 ATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || || | || || | ||||| ||||| || || |||||| |||| || Sbjct 32380 ATCTCTTGAAAATCTTGCTTTGCATCATCTACCCCAGCCACATCATCAAATGT 32432 >seq37818 Length=88620 Score = 159 bits (176), Expect = 1e-33 Identities = 328/475 (69%), Gaps = 32/475 (7%) Strand=Plus/Minus Query 288891 ATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGG--TTTGCTTA-AATCCATC 288947 ||| | ||| |||||||| ||||| ||| ||| | | | ||| | | || ||||| Sbjct 62187 ATCTGGTCTATTTGTTGCAGCCAA---AACTATAACTCCAGAATTTCCAGAGAACCCATC 62131 Query 288948 CATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATC 289007 ||| ||| || | ||||||| || || || || ||||||||| ||||| Sbjct 62130 CATTTCTGTCAACAGCTGATTAATCGTCTGCTCTCTCTCATCATTTCCACCTC------- 62078 Query 289008 ACCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAAATCACAC 289063 | | || || ||| ||| | |||||||||||||| || ||||| || | | || Sbjct 62077 ---CAAGTCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACAATAC 62021 Query 289064 ACGGAGAATTTTGTCT-CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCA 289122 | || | ||| | || ||| | |||| || || ||||| | || ||||| | ||| Sbjct 62020 AAGGCGC-TTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCACACCG 61962 Query 289123 ACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCC 289181 ||| ||| || ||||| || || || | || ||| | |||| ||| ||| || || Sbjct 61961 ACAAACAACTCAACAAACTCTGATGCTGC-ACATGAGAAAAATGGCACACCTGCCTCACC 61903 Query 289182 TGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCC 289241 |||||||| || |||| |||||||||||| || |||||||||||| |||| ||| || Sbjct 61902 AGCTACTGCTCTTGCCAAAAGTGTCTTACCAGTACCAGGTGGTCCCACTAAAAGACACCC 61843 Query 289242 CTTTGGTACTTTTGCCCC---AGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTAC 289298 ||||||| || || || ||||| ||||||| ||||| | || || || || || Sbjct 61842 TTTTGGTATCTTAGCACCTAAAGCAG---TATATTTATCAGGATTTTTCAAGAAATCAAC 61786 Query 289299 AATTTCCT-CAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || ||| | ||| | || | || |||| |||| || || ||||||||||| || Sbjct 61785 AACTTCTTGCAACTCCA-ACTTGGCCTGATCAGCACCAGCAACATCAGCAAATGT 61732 >seq9544 Length=262091 Score = 145 bits (160), Expect = 2e-29 Identities = 290/422 (69%), Gaps = 22/422 (5%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || || | |||||||| || || || || |||||||| ||| Sbjct 111982 AAACCCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCACC 111923 Query 288999 TC---TTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAA 289055 || || |||| || || | || || ||||||||||| || ||||| || Sbjct 111922 TCCCATTCCTGCACC----TCTCTGCCTT-----CCCACAGCATCAATCTCATCAATAAA 111872 Query 289056 AATCACACACGGAGAATTTTGTCT-CGCAATTGCAAATAATTCTCTTACACGGGATGCTC 289114 | | ||| || | ||| | || ||| | | || || || || || | || |||| Sbjct 111871 CACAATACAAGGCGC-TTTCGACTTCGCCTTCTCGAACAAATCCCTCACTCTAGAAGCTC 111813 Query 289115 CAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTT 289173 | | ||| ||| ||| || ||||| || || || | || ||| | |||| |||| Sbjct 111812 CTACACCCACAAACAACTCAACAAACTCTGATGCCGC-ACATGAGAAAAATGGTACACCA 111754 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAAT 289233 ||||| || || ||||| || |||| ||||||||| ||||| |||||||||||| | || Sbjct 111753 GCTTCACCAGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGGTGGTCCCACCAAA 111694 Query 289234 AGAACTCCCTTTGGTACTTTTGCCCC---AGCAGACTTATATTTCTCAGGGCTCTTTAAA 289290 ||| || ||||||| ||| || || ||||| |||| || ||||| |||||||| Sbjct 111693 AGACACCCTTTTGGTATTTTAGCACCTAAAGCAG---TATACTTATCAGGATTCTTTAAA 111637 Query 289291 AATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAA 289350 || || || | ||| | | || |||| || | |||| || || |||||||||||| Sbjct 111636 AAATCAACCACTTCTTGTAACTCCAATTTAGCTTGATCAGCACCAGCAACATCAGCAAAA 111577 Query 289351 GT 289352 || Sbjct 111576 GT 111575 >seq31771 Length=288191 Score = 131 bits (144), Expect = 5e-25 Identities = 219/314 (70%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| || || ||||| ||| | ||| || | ||| || || || || || ||||| Sbjct 181317 CATGATATCCTCCATGGCCTTCACTAATCGCCTCTGGATGTACCCGGTCTCGGAAGTTTT 181258 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| |||||||||||||| | | ||||||||||||||||||||| | ||| | || Sbjct 181257 CACAGCAGTATCAATTAGACCTTCTCTACCACCCATAGCATGGAAGAAGAACTCCTGGGG 181198 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 || |||| || | | || |||| || |||||||| || || || || Sbjct 181197 GGTCAGTCCCCGAAGATATGAATTCTCCACAAAACCACGACTTTCTGGACCATAATCATC 181138 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803 ||||||||| || || || || | || | | | | || | || ||||| || || |||| Sbjct 181137 CTTGGTAAAATGAGGTAGAGTACGGTCTATGA-ACCCAAAAGGAATACGTTTCCCTTCAA 181079 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGC 302863 | ||||| || |||| || | | |||| || || || || | | ||| |||||||| | Sbjct 181078 CATTCTGTTGCCCCACACAAGCAGTCATTTGAGATATGTTAATAAAACTTCCCTTGGACC 181019 Query 302864 CAGCATTTACCATA 302877 ||||| | |||||| Sbjct 181018 CAGCAGTAACCATA 181005 >seq50128 Length=96782 Score = 125 bits (138), Expect = 2e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| ||||| || || || |||||| | |||| ||| ||| | ||| || ||| Sbjct 56740 ACAAACATGAACTCTATATGCATCACTTTGGTCAAATAACCGCTCTTTGAGAAAATGAGC 56799 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||||| || | |||||||||||| || |||||||| |||||||||||||||||||| || Sbjct 56800 AGCACCATGAGCAATCATACAATCTCGTTCCATTTCCCCGAAACGAAGACCACCATCACG 56859 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 | || ||| || |||||||| | ||||| | || ||| || || | ||| Sbjct 56860 TGACCGACCTTCCGCAGGCTGCCTTGTGAGGATTTGCACAGGGCCTCTGCCTCTAGAATG 56919 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||| |||| ||||| ||||| || ||||||||| | | |||||| | ||| || Sbjct 56920 AATCTTGTCATCAACCATGTGCTTCAGTCGCTGGTAGTACGTGGGACCAAGGAATAT 56976 Score = 86.0 bits (94), Expect = 2e-11 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 233262 AAAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGAC 233321 |||||| | |||||| ||||||||||||||||| ||||||||||| || | ||| |||| Sbjct 56791 AAAATGA-GCAGCACCATGAGCAATCATACAATCTCGTTCCATTTCCCCGAAACGAAGAC 56849 Query 233322 CACCATCATTTGACCTACC 233340 |||||||| ||||| ||| Sbjct 56850 CACCATCACGTGACCGACC 56868 >seq2125 Length=154978 Score = 125 bits (138), Expect = 2e-23 Identities = 284/417 (68%), Gaps = 14/417 (3%) Strand=Plus/Plus Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || || ||||| ||| || | ||| || || || ||||||||||||||||| ||| Sbjct 125677 AAACCGTCCATTTCTGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTCCCTCCT 125736 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 | ||| | | || ||| ||| ||||||||||||||||| |||| || | Sbjct 125737 CC--AATTCC---AGTCCCTC-TTTGCCGCCCAACAGCATCAATTTCATCAACAAATACA 125790 Query 289060 ACACACGGAGAATTTTGTCTCGCAAT--TGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 | || |||| ||||| | || | || ||| | || | ||| || || ||||||| Sbjct 125791 ATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAAAGA--TCACGTACTCGAGAGGCTCCAA 125848 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCT 289176 ||||||| |||| || |||||||| ||| | || | |||| | |||| ||| ||| Sbjct 125849 CACCAACAAACATCTCAACAAATTCTGAACCTGAAA-TTGAGAAAAATGGAACACCCGCT 125907 Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236 || || || | |||| | || || || ||||| || || || || || || | | ||| Sbjct 125908 TCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCCAGTACCCGGAGGACCAACAAGAAGA 125967 Query 289237 ACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCT 289296 || || ||||| | ||||| | | || | |||| || |||| ||||||||| Sbjct 125968 ACACCTTTTGGAATACGAGCCCCCACTGCAGTAAACCTCTCGGGCTTCTTCAAAAATTCT 126027 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATC-ACATCCTGCTACATCAGCAAAAGT 289352 || | ||| || || | |||||| ||||| ||| || || |||||| |||| || Sbjct 126028 ACGACCTCCATAAAATCTTGTTTTGCTTCATCTACA-CCAGCAACATCATCAAATGT 126083 >seq51953 Length=43381 Score = 113 bits (124), Expect = 1e-19 Identities = 324/483 (67%), Gaps = 29/483 (6%) Strand=Plus/Plus Query 288874 AATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATA---GATTCG 288930 || ||| |||||||||||| | ||| ||||| | || | |||||| | | ||| | Sbjct 30548 AAGGCTTTGTCTAATATATCAGGTCTATTTGTGCCAGCAAGTACAACCACACCTGATGTG 30607 Query 288931 GTTTGCTTAAATCCATCCATACTTGTTAAA--ATTTGATT--AAGTGTTTGTTCCCTTTC 288986 ||| || ||| || ||||| || || | |||||| ||||| || || | ||| Sbjct 30608 GTT-GC--AAAACCGTCCAT--TTCAACAAGCAGTTGATTTAAAGTGCTT--TCACGTTC 30660 Query 288987 ATCATTTGAACCTCTTGAAT---CACCCGAATCGCTC-CtttttttACCAACAGCATCAA 289042 ||||| | |||| ||| ||||| ||| | ||| | ||||| ||||||| Sbjct 30661 ATCATGT---CCTCCAGAAAAGCCACCC----CGCCCTCTTGCTCGACCAATGGCATCAA 30713 Query 289043 TTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTA 289102 | || ||||||||||| | || || | | |||| || |||||| || | Sbjct 30714 TCTCATCAATGAAAATTATACTAGGCGCACACTGTCGTGCCTCCTGAAATAAGCTCCTAA 30773 Query 289103 CACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGA 289162 | | || || ||||| ||||||| |||| || | ||| || || | |||| | || || Sbjct 30774 CTCTGGCTGGTCCAACACCAACAAACATCTCCATAAAATCTGACCCAGATA-TAGAGAGA 30832 Query 289163 AT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGT 289221 | | |||| | || || ||| ||| |||| ||||||||||| || || ||||| Sbjct 30833 AAAGGTACACCAGACTCTCCAGCTGTAGCCTTCGCAAGAAGTGTCTTTCCAGTCCCAGGA 30892 Query 289222 GGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTATATTTCTCAGG 289280 || ||| ||| ||| | ||||| |||| ||| || |||| | | || |||||||| || Sbjct 30893 GGACCCACTAGAAGAGCACCCTTGGGTATTTTGGCTCCCAACTG-CTCATATTTCTTGGG 30951 Query 289281 GCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTAC 289340 | | || | || | || | ||| | ||| | |||||||| |||||||| || || Sbjct 30952 GTTTTTAAGGAAGTGGACGAACTCCATGATTTCTTGCTTTGCCTCGTCACATCCAGCCAC 31011 Query 289341 ATC 289343 ||| Sbjct 31012 ATC 31014 >seq39264 Length=228427 Score = 89.7 bits (98), Expect = 2e-12 Identities = 211/316 (67%), Gaps = 2/316 (1%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| |||||| || || |||||||| | | || || | | ||||| || Sbjct 136516 ACCAATAGCATCGATCTCATCAATGAATACTATACTAGGTGCACACTGTCTTGCCTCCTG 136575 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 |||||| || || | |||| |||| ||||||| |||| || | |||||| || | Sbjct 136576 AAATAAGCTCCTAACTCTAGATGGCCCAACACCAACAAACATCTCCATAAATTCTGACCC 136635 Query 289149 GGATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 || | | || ||| | |||| | ||| |||||| || | || |||||||||| Sbjct 136636 AGAAA-TCGAGAGAAAAGGTACACCAGATTCCCCTGCTGTAGCTTTAGCTAGAAGTGTCT 136694 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 | || |||||||| || ||| ||| ||| | ||||| || | ||| || || || Sbjct 136695 TTCCAGTTCCAGGAGGACCCACTAGCAGAGCACCCTTAGGAATTTTGGCTCCTAACTCCT 136754 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 ||| |||| ||| |||| | || | || | ||| | ||| | || ||||||| Sbjct 136755 CATACTTCTTGGGGTTCTTAAGGAAGTGGACGAACTCCATGATTTCTTGCTTAGCCTCAT 136814 Query 289328 CACATCCTGCTACATC 289343 ||||||| || ||||| Sbjct 136815 CACATCCAGCCACATC 136830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470815730080136