Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq38302 143 3e-28 seq44697 138 1e-26 seq37474 93.3 5e-13 seq49530 87.8 2e-11 >seq38302 Length=59671 Score = 143 bits (158), Expect = 3e-28 Identities = 195/272 (72%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||| || || ||||| ||||||||||| || || | |||| || |||||| Sbjct 23391 GAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGG 23450 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| ||||| ||||| || ||||||||||| |||||| ||| Sbjct 23451 ACTTCTTTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAA 23510 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| |||| || || | || || | || | ||||||| | Sbjct 23511 AAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGG 23570 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 || |||| | || || || || || ||||||| ||||| ||| ||||||||| Sbjct 23571 GTATCGGAAGATAAATCGACTTCTTCCGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTAC 23630 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 || ||||| | ||| |||| | || ||||| Sbjct 23631 ATTTCCCAAATTTGTGGGTATTGAATTGGGAA 23662 >seq44697 Length=182102 Score = 138 bits (152), Expect = 1e-26 Identities = 196/273 (72%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||| || || ||||| ||||||||||| || || | |||| || |||||| Sbjct 113571 GAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGG 113630 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| ||||| ||||| || ||||||||||| |||||| ||| Sbjct 113631 ACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAA 113690 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| |||| || || | || || | || | |||||| |||| Sbjct 113691 AAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGT-GACG 113749 Query 869813 G-TGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | | || | | || || || || || ||||||| ||||| ||| |||||||| Sbjct 113750 GTTATCAGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTA 113809 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 ||| ||||| | ||| |||| | || ||||| Sbjct 113810 CATTTCCCAAATTTGTGGGTATTGAATTGGGAA 113842 >seq37474 Length=168045 Score = 93.3 bits (102), Expect = 5e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||||||| | |||||||| ||||| ||||| || | ||||||| || Sbjct 131383 GCTGCCAACTACTTGAACATCAAGAGCCTGCTTGATCTCACATGTCAAACTGTGGCTGAC 131442 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||| || || ||| |||| ||||||||||| |||||||||||||||||| Sbjct 131443 ATGATTAAAGGGAAGACGCCAGAGGAGATCCGGAAGACCTTTAACATCAAG 131493 >seq49530 Length=192307 Score = 87.8 bits (96), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| | |||||||| | |||| ||||| || || ||||||| || Sbjct 108042 GCTGCTAACTATTTGAACATCAAGAGTTTGCTTGATCTCACTTGTCAGACTGTGGCAGAC 107983 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| || | || |||||||||||||||||||| ||||||||| Sbjct 107982 ATGATCAAGGGGAAAACTCCGGAGGAGATCCGCAAGACCTTCAACATCAAG 107932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6102779267521576