Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq38302 143 3e-28
seq44697 138 1e-26
seq37474 93.3 5e-13
seq49530 87.8 2e-11
>seq38302
Length=59671
Score = 143 bits (158), Expect = 3e-28
Identities = 195/272 (72%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
||||||||||| || || ||||| ||||||||||| || || | |||| || ||||||
Sbjct 23391 GAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGG 23450
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || |||||||||| ||||| ||||| || ||||||||||| |||||| |||
Sbjct 23451 ACTTCTTTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAA 23510
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812
|| || |||||||| |||| || || | || || | || | ||||||| |
Sbjct 23511 AAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGG 23570
Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872
|| |||| | || || || || || ||||||| ||||| ||| |||||||||
Sbjct 23571 GTATCGGAAGATAAATCGACTTCTTCCGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTAC 23630
Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904
|| ||||| | ||| |||| | || |||||
Sbjct 23631 ATTTCCCAAATTTGTGGGTATTGAATTGGGAA 23662
>seq44697
Length=182102
Score = 138 bits (152), Expect = 1e-26
Identities = 196/273 (72%), Gaps = 2/273 (1%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
||||||||||| || || ||||| ||||||||||| || || | |||| || ||||||
Sbjct 113571 GAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGG 113630
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || |||||||||| ||||| ||||| || ||||||||||| |||||| |||
Sbjct 113631 ACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAA 113690
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812
|| || |||||||| |||| || || | || || | || | |||||| ||||
Sbjct 113691 AAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGT-GACG 113749
Query 869813 G-TGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871
| | || | | || || || || || ||||||| ||||| ||| ||||||||
Sbjct 113750 GTTATCAGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTA 113809
Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904
||| ||||| | ||| |||| | || |||||
Sbjct 113810 CATTTCCCAAATTTGTGGGTATTGAATTGGGAA 113842
>seq37474
Length=168045
Score = 93.3 bits (102), Expect = 5e-13
Identities = 87/111 (78%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| ||||||||| | |||||||| ||||| ||||| || | ||||||| ||
Sbjct 131383 GCTGCCAACTACTTGAACATCAAGAGCCTGCTTGATCTCACATGTCAAACTGTGGCTGAC 131442
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296
||||| || || ||| |||| ||||||||||| ||||||||||||||||||
Sbjct 131443 ATGATTAAAGGGAAGACGCCAGAGGAGATCCGGAAGACCTTTAACATCAAG 131493
>seq49530
Length=192307
Score = 87.8 bits (96), Expect = 2e-11
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| || ||||| | |||||||| | |||| ||||| || || ||||||| ||
Sbjct 108042 GCTGCTAACTATTTGAACATCAAGAGTTTGCTTGATCTCACTTGTCAGACTGTGGCAGAC 107983
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296
||||||||||| || | || |||||||||||||||||||| |||||||||
Sbjct 107982 ATGATCAAGGGGAAAACTCCGGAGGAGATCCGCAAGACCTTCAACATCAAG 107932
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6102779267521576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |