Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq50574 89.7 4e-13 seq50758 87.8 1e-12 seq19192 87.8 1e-12 seq50708 84.2 2e-11 seq48040 84.2 2e-11 seq20296 82.4 6e-11 >seq50574 Length=377344 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/226 (69%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 110257 TTATAAGAGATTTAAA-ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCG 110315 |||| | | ||||| | ||||| || || || ||||| | ||||| || ||||| || Sbjct 95292 TTATTATATATTTACAGATGCAGATCTTCGTGAAAACCCTTACCGGAAAGACCATCACTC 95233 Query 110316 TCGAAACGGAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAG 110375 |||| ||| | ||| || ||| | | |||||| || || ||||| |||| Sbjct 95232 TCGAGGTCGAGAGTTCCGACACAATCGACAACGTAAAAGCCAAAATCCAGGACAAGGAAG 95173 Query 110376 GCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAA 110435 | | ||| ||||| ||||| ||||| | || || || ||||| ||||| | | | | Sbjct 95172 GAATTCCCCCAGATCAGCAAAGGCTTATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGTA 95113 Query 110436 CAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 | | || ||||||||||| || || |||||||| | ||| |||| Sbjct 95112 CTCTCGCCGATTACAACATCCAGAAGGAATCTACCCTTCACTTGGT 95067 >seq50758 Length=122349 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 |||||||| ||||||||||| ||||||| ||||| || ||| | ||| || | || Sbjct 118036 ATGCAAATCTTTGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTC- 118094 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || | | | | || || ||||||| || ||||| || | || ||||| Sbjct 118095 CGACACAATTGACAACGTTAAGGCGAAGATTCAGGATAAAGAGGGAATCCCACCAGATCA 118154 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || | || | ||| || |||||| |||| |||| | | || | || |||||||| Sbjct 118155 GCAGAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGTACCCTAGCTGATTACAA 118214 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||| || || || || | ||| ||||| | | || || || |||| Sbjct 118215 CATTCAGAAGGAGTCGACTCTTCACTTGGTGCTCCGTCTTCGTGGTGGAA 118264 >seq19192 Length=430667 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 ||||| |||||||| |||||||| || || || ||||| || | ||| |||| || Sbjct 373404 ATGCAGATATTTGTTAAAACTTTGACAGGGAAGACCATCACTTTGGAAGTGGAGAGCTCT 373345 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | | || || || ||| ||||||||||| | || ||| Sbjct 373344 GAC---ACTATTGACAACGTGAAGGCCAAAATTCAGGACAAAGAAGGGATCCCACCAGAT 373288 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || || || | ||| ||||| ||||||||||||| | || | || |||||| Sbjct 373287 CAGCAGAGGCTCATATTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTTGCAGATTAC 373228 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || ||||| ||||| || | ||| | ||| Sbjct 373227 AATATCCAAAAGGAATCCACACTCCACCTTGTG 373195 >seq50708 Length=321788 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/121 (76%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 110349 TAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATG 110408 ||||||| |||||| ||||| ||||| | || |||||||||||| | |||| || Sbjct 282277 TAAAACA-AAGATTCAAGACAAGGAAGGAATTCCTCCGGATCAACAAAGGTTGATTTTTG 282219 Query 110409 CGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTA 110468 | || ||||| || ||||||| ||||| | || ||||| |||||||| || ||||| | Sbjct 282218 CTGGAAAACAACTCGAGGATGGGCGAACACTTGCTGATTATAACATTCAGAAGGAATCCA 282159 Query 110469 C 110469 | Sbjct 282158 C 282158 >seq48040 Length=167738 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 || ||||||||| | || ||||| || ||||| |||| ||| || |||||| |||| Sbjct 54647 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAGTTGGAA 54706 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| | || |||| |||||||||||||| |||||||| || | ||| | || || Sbjct 54707 GATGGGCGGACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCACCTTGTTTTG 54766 Query 110486 AGACTGCGAGGGGGAA 110501 || || | || |||| Sbjct 54767 AGGCTCAGGGGAGGAA 54782 >seq20296 Length=523354 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCC 110328 || ||||| || || || ||||| |||| || || ||||| ||| | || || | || Sbjct 452738 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTTGAGGTCGAATCC 452797 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 | ||| || ||| | | || || ||||| ||||| |||||| | || ||| Sbjct 452798 TC-CGACACAATCGACAACGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCACCGGA 452856 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 || || | || |||| || || |||||||||||||||| | |||| | || ||||| Sbjct 452857 CCAGCAGCGGCTCATTTTCGCCGGAAAACAGCTGGAGGATGGCCGAACCCTAGCTGATTA 452916 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||| || || ||||| || | || ||||| Sbjct 452917 CAACATCCAGAAGGAATCCACTCTCCATTTGGTG 452950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412574286096104