Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq38302 114 2e-19
seq44697 109 9e-18
>seq38302
Length=59671
Score = 114 bits (126), Expect = 2e-19
Identities = 176/250 (70%), Gaps = 1/250 (0%)
Strand=Plus/Plus
Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208
|||||||| |||||||| || |||||||| | ||||| ||||| || ||||||||
Sbjct 23435 GGCCTCGGCAACTTGGACTTCTTTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCC 23494
Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268
||| |||||| |||||||| |||||||| |||| || || | || || | ||
Sbjct 23495 GTCTGAGGCGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAG 23554
Query 796269 CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328
| ||||||| || |||| | ||||| || || || ||||| || |||||
Sbjct 23555 GGTTTCCCAGTGACGGGTATCGGAAGATAAATCGACTTCTTCCGCAGTCCAGAAAGAGGC 23614
Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCG 796388
||| ||||||||||| ||||| || || |||| | || ||||||| | || ||
Sbjct 23615 TAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACATACAGAACCG 23674
Query 796389 AT-TGGGGTT 796397
|| |||| ||
Sbjct 23675 ATCTGGGCTT 23684
>seq44697
Length=182102
Score = 109 bits (120), Expect = 9e-18
Identities = 177/251 (71%), Gaps = 3/251 (1%)
Strand=Plus/Plus
Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208
|||||||| |||||||| || |||||||| | ||||| ||||| || ||||||||
Sbjct 113615 GGCCTCGGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCC 113674
Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268
||| |||||| |||||||| |||||||| |||| || || | || || | ||
Sbjct 113675 GTCTGAGGCGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAG 113734
Query 796269 CGAGACCCAGTGGACCG-TGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327
| |||||| ||| | | || | | ||||| || || || ||||| || ||||
Sbjct 113735 GGTTTCCCAGT-GACGGTTATCAGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGG 113793
Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGC 796387
| ||| ||||||||||| ||||| || || |||| | || ||||||| | || |
Sbjct 113794 CTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACATACAGAACC 113853
Query 796388 GAT-TGGGGTT 796397
||| |||| ||
Sbjct 113854 GATCTGGGCTT 113864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7910594932323192
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |