Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq38302 114 2e-19 seq44697 109 9e-18 >seq38302 Length=59671 Score = 114 bits (126), Expect = 2e-19 Identities = 176/250 (70%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||||| |||||||| || |||||||| | ||||| ||||| || |||||||| Sbjct 23435 GGCCTCGGCAACTTGGACTTCTTTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCC 23494 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 ||| |||||| |||||||| |||||||| |||| || || | || || | || Sbjct 23495 GTCTGAGGCGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAG 23554 Query 796269 CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 | ||||||| || |||| | ||||| || || || ||||| || ||||| Sbjct 23555 GGTTTCCCAGTGACGGGTATCGGAAGATAAATCGACTTCTTCCGCAGTCCAGAAAGAGGC 23614 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCG 796388 ||| ||||||||||| ||||| || || |||| | || ||||||| | || || Sbjct 23615 TAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACATACAGAACCG 23674 Query 796389 AT-TGGGGTT 796397 || |||| || Sbjct 23675 ATCTGGGCTT 23684 >seq44697 Length=182102 Score = 109 bits (120), Expect = 9e-18 Identities = 177/251 (71%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||||| |||||||| || |||||||| | ||||| ||||| || |||||||| Sbjct 113615 GGCCTCGGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCC 113674 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 ||| |||||| |||||||| |||||||| |||| || || | || || | || Sbjct 113675 GTCTGAGGCGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAG 113734 Query 796269 CGAGACCCAGTGGACCG-TGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 | |||||| ||| | | || | | ||||| || || || ||||| || |||| Sbjct 113735 GGTTTCCCAGT-GACGGTTATCAGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGG 113793 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGC 796387 | ||| ||||||||||| ||||| || || |||| | || ||||||| | || | Sbjct 113794 CTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACATACAGAACC 113853 Query 796388 GAT-TGGGGTT 796397 ||| |||| || Sbjct 113854 GATCTGGGCTT 113864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7910594932323192