Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq51452 105 5e-18 seq50758 89.7 4e-13 seq32633 86.0 5e-12 >seq51452 Length=252770 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| ||||| ||||| || || ||||| || | ||| ||| ||| Sbjct 58215 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAGACCATCACATTGGAAGTTGAGAGCTC 58156 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || | | | | || || ||||| ||||||||||| | || ||| | Sbjct 58155 A-GACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCGCCGGACC 58097 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| || |||||| ||||||| | | ||| |||||||||||| Sbjct 58096 AGCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTGGCGGACTACA 58037 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 | || || ||||||||||| | || | ||| |||| ||| | || ||| Sbjct 58036 ATATCCAGAAGGAGTCTACTCTCCATCTTGTGCTGAGGTTGAGGGGTGGA 57987 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| ||||| ||||| || |||||||| || | ||| ||| ||| Sbjct 4066 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 4007 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || | | | | || || ||||||| ||||| || ||| | || || | Sbjct 4006 A-GACACGATTGACAATGTGAAGGCAAAGATTCAGGATAAGGAGGGCATTCCACCAGACC 3948 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| ||||| | ||| || || ||| ||||||| | | ||| | || || |||| Sbjct 3947 AGCAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCTGATTACA 3888 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 | ||||| ||||||||||| | || | ||| |||| || | || ||| Sbjct 3887 ATATTCAGAAGGAGTCTACTCTCCATCTTGTGCTGAGGCTGAGGGGTGGA 3838 >seq50758 Length=122349 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 |||||||| ||||||||||| |||| || ||||| || ||| | ||| || | ||| Sbjct 118036 ATGCAAATCTTTGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTC- 118094 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || || |||||| |||||||| || | || ||||| Sbjct 118095 CGACACAATTGACAACGTTAAGGCGAAGATTCAGGATAAAGAGGGAATCCCACCAGATCA 118154 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || |||||| |||| || | | || | || || ||||| Sbjct 118155 GCAGAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGTACCCTAGCTGATTACAA 118214 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| |||||||| || | ||| ||||| Sbjct 118215 CATTCAGAAGGAGTCGACTCTTCACTTGGTG 118245 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| ||||| || || || |||||||| || | || ||| | Sbjct 118720 ATGCAGATTTTTGTGAAAACGTTGACCGGGAAAACCATCACTTTGGAGGTGGAAAGTTCT 118779 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | | || ||| |||||| || || || || | ||| ||||||| Sbjct 118780 GATACTATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAG 118839 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | |||||| || || |||| || | | || |||| || || || Sbjct 118840 CAGAGGCTGATCTTTGCGGGGAAGCAATTGGAAGATGGAAGGACTCTGGCTGATTATAAT 118899 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 ||||| |||||||| || ||||| Sbjct 118900 ATTCAGAAGGAGTCCACCCTGCAC 118923 >seq32633 Length=132462 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| |||||||| ||||| || || |||||| | || ||| | | Sbjct 61112 ATGCAGATCTTTGTAAAAACTTTGACAGGAAAGACTATTACCCTTGAGGTTGAGAGTTCC 61053 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| || || |||||||||||| | || |||||| Sbjct 61052 GATACAATTGACAATGTCAAAGCTAAAATCCAGGATAAAGAAGGCATTCCTCCAGATCAG 60993 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || || || || ||||| | || | || |||||||| Sbjct 60992 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACTCTTGCTGACTACAAT 60933 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 ||||| ||||| || || |||| ||||| |||| Sbjct 60932 ATTCAGAAGGAATCCACTCTGCATCTGGTGCTGAG 60898 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || | || || || || |||||| | || ||| ||| Sbjct 60428 ATGCAGATCTTTGTCAAGACGCTGACTGGGAAGACGATTACCTTGGAGGTAGAGAGCTC- 60370 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||||| | | | | || || ||||||| ||||| ||||| | || || || Sbjct 60369 CGATACTATTGACAACGTGAAGGCAAAGATTCAGGATAAGGAAGGTATTCCACCAGACCA 60310 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || |||| ||| ||||| ||||||||||| | || | || || || || Sbjct 60309 GCAGAGGCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGTACCCTTGCTGATTATAA 60250 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||| ||||| || || | ||| |||| Sbjct 60249 CATTCAGAAGGAATCAACTCTTCACCTGGT 60220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398618528269192