Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq51452 136 6e-27
seq32633 105 1e-17
seq19192 91.5 2e-13
seq50708 87.8 3e-12
seq50758 84.2 3e-11
>seq51452
Length=252770
Score = 136 bits (150), Expect = 6e-27
Identities = 155/208 (75%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | ||||||||||| ||||||||||| || | || || || |
Sbjct 59125 TGCAAATTTTCGTTAAAACATTAACCGGAAAAACAATCACGTTGGAAGTTGAGAGCTCGG 59066
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||||||| | ||||| || | ||||| ||| ||| ||||| |||||||| || ||||
Sbjct 59065 ATACTATTGATAATGTTAAGACGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCAAC 59006
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||||| |||||||| || || ||||| || ||| | || | ||||||||||||
Sbjct 59005 AAAGACTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAATA 58946
Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239
| ||||| || || || |||| ||||
Sbjct 58945 TTCAAAAGGAGTCAACACTCCACCTAGT 58918
Score = 89.7 bits (98), Expect = 8e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
||||| ||| | ||||| || || ||||| ||| || || || ||||| || ||
Sbjct 58610 GATACCATTGACAATGTGAAGGCCAAGATACAGGATAAGGAGGGTATCCCACCAGACCAG 58551
Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210
|| ||||| ||||||||||| |||||||| || ||| || || | |||||||||||
Sbjct 58550 CAGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGGAAGGACTCTCGCAGATTATAAT 58491
Query 146211 ATACAAAAAGAATCGAC 146227
|| ||||| ||||| ||
Sbjct 58490 ATTCAAAAGGAATCCAC 58474
Score = 84.2 bits (92), Expect = 3e-11
Identities = 136/196 (69%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | || || ||||| ||||||||||| || | || || || |
Sbjct 58897 TGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTCGG 58838
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || || | ||||| || |||||| ||| || || || || ||||| ||||| |
Sbjct 58837 ACACGATAGACAATGTTAAGTCTAAAATTCAAGACAAGGAGGGTATCCCACCTGATCAGC 58778
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || | |||||||| || || |||||||| ||| ||||| | | |||||||| |
Sbjct 58777 AGAGGTTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATAACA 58718
Query 146212 TACAAAAAGAATCGAC 146227
| || || ||||| ||
Sbjct 58717 TCCAGAAGGAATCAAC 58702
>seq32633
Length=132462
Score = 105 bits (116), Expect = 1e-17
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || ||||||| || |||||||| || ||||| |||| || || | ||
Sbjct 61111 TGCAGATCTTTGTAAAAACTTTGACAGGAAAGACTATTACCCTTGAGGTTGAGAGTTCCG 61052
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| | ||||| ||| |||||| || ||||||||||||||| || ||||| |
Sbjct 61051 ATACAATTGACAATGTCAAAGCTAAAATCCAGGATAAAGAAGGCATTCCTCCAGATCAGC 60992
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || | || ||||| || || ||| | || ||| | | || | | || || ||||
Sbjct 60991 AGAGGTTGATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACTCTTGCTGACTACAATA 60932
Query 146212 TACAAAAAGAATCGACTATCCAT 146234
| || || ||||| ||| | |||
Sbjct 60931 TTCAGAAGGAATCCACTCTGCAT 60909
>seq19192
Length=430667
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | || || || ||||||||||| || || | || || || | |
Sbjct 373631 TGCAAATCTTTGTCAAGACTTTGACAGGAAAAACTATCACCTTGGAGGTTGAGAGTTCGG 373572
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | ||||| || ||||| ||| || ||||| ||||| || || || |
Sbjct 373571 ACACAATTGATAATGTGAAGGCCAAAATTCAAGACAAGGAAGGGATTCCCCCAGACCAGC 373512
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| |||| || |||||||| || ||| | || ||| || || | | |||||||| |
Sbjct 373511 AGCGACTGATATTTGCAGGGAAGCAACTTGAAGATGGAAGGACACTTGCTGATTATAACA 373452
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259
|||| || || ||||| | ||| | || || || || || |||||||
Sbjct 373451 TACAGAAGGAGTCGACACTTCATCTGGTGTTGCGTTTGAGGGGAGGTA 373404
>seq50708
Length=321788
Score = 87.8 bits (96), Expect = 3e-12
Identities = 120/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
|| || ||| | ||||| |||| || || ||| || ||||| ||||| || ||||||
Sbjct 282294 GACACCATTGACAATGTTAAAACAAAGATTCAAGACAAGGAAGGAATTCCTCCGGATCAA 282235
Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210
||||| | |||||||| || |||||| | || ||| |||| | | ||||||||
Sbjct 282234 CAAAGGTTGATTTTTGCTGGAAAACAACTCGAGGATGGGCGAACACTTGCTGATTATAAC 282175
Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258
|| || || ||||| ||| ||||| | || || || | | ||||||
Sbjct 282174 ATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGGT 282127
>seq50758
Length=122349
Score = 84.2 bits (92), Expect = 3e-11
Identities = 136/196 (69%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | ||||| || || || ||||| || ||| | || || ||| | |
Sbjct 118721 TGCAGATTTTTGTGAAAACGTTGACCGGGAAAACCATCACTTTGGAGGTGGAAAGTTCTG 118780
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||||||| | ||||| ||| ||| || || || || || ||||| || ||||| |
Sbjct 118781 ATACTATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAGC 118840
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || || || ||||| || || ||||| || ||| || || | | ||||||||||
Sbjct 118841 AGAGGCTGATCTTTGCGGGGAAGCAATTGGAAGATGGAAGGACTCTGGCTGATTATAATA 118900
Query 146212 TACAAAAAGAATCGAC 146227
| || || || || ||
Sbjct 118901 TTCAGAAGGAGTCCAC 118916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 785644306893760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |