Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq51452 136 6e-27 seq32633 105 1e-17 seq19192 91.5 2e-13 seq50708 87.8 3e-12 seq50758 84.2 3e-11 >seq51452 Length=252770 Score = 136 bits (150), Expect = 6e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||||||||| ||||||||||| || | || || || | Sbjct 59125 TGCAAATTTTCGTTAAAACATTAACCGGAAAAACAATCACGTTGGAAGTTGAGAGCTCGG 59066 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| || | ||||| ||| ||| ||||| |||||||| || |||| Sbjct 59065 ATACTATTGATAATGTTAAGACGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCAAC 59006 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| |||||||| || || ||||| || ||| | || | |||||||||||| Sbjct 59005 AAAGACTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAATA 58946 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| || || || |||| |||| Sbjct 58945 TTCAAAAGGAGTCAACACTCCACCTAGT 58918 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| || || ||||| ||| || || || ||||| || || Sbjct 58610 GATACCATTGACAATGTGAAGGCCAAGATACAGGATAAGGAGGGTATCCCACCAGACCAG 58551 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||||| ||||||||||| |||||||| || ||| || || | ||||||||||| Sbjct 58550 CAGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGGAAGGACTCTCGCAGATTATAAT 58491 Query 146211 ATACAAAAAGAATCGAC 146227 || ||||| ||||| || Sbjct 58490 ATTCAAAAGGAATCCAC 58474 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || ||||| ||||||||||| || | || || || | Sbjct 58897 TGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTCGG 58838 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || |||||| ||| || || || || ||||| ||||| | Sbjct 58837 ACACGATAGACAATGTTAAGTCTAAAATTCAAGACAAGGAGGGTATCCCACCTGATCAGC 58778 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | |||||||| || || |||||||| ||| ||||| | | |||||||| | Sbjct 58777 AGAGGTTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATAACA 58718 Query 146212 TACAAAAAGAATCGAC 146227 | || || ||||| || Sbjct 58717 TCCAGAAGGAATCAAC 58702 >seq32633 Length=132462 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||| || |||||||| || ||||| |||| || || | || Sbjct 61111 TGCAGATCTTTGTAAAAACTTTGACAGGAAAGACTATTACCCTTGAGGTTGAGAGTTCCG 61052 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| |||||| || ||||||||||||||| || ||||| | Sbjct 61051 ATACAATTGACAATGTCAAAGCTAAAATCCAGGATAAAGAAGGCATTCCTCCAGATCAGC 60992 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||| || || ||| | || ||| | | || | | || || |||| Sbjct 60991 AGAGGTTGATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACTCTTGCTGACTACAATA 60932 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | || || ||||| ||| | ||| Sbjct 60931 TTCAGAAGGAATCCACTCTGCAT 60909 >seq19192 Length=430667 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || || ||||||||||| || || | || || || | | Sbjct 373631 TGCAAATCTTTGTCAAGACTTTGACAGGAAAAACTATCACCTTGGAGGTTGAGAGTTCGG 373572 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || ||||| ||| || ||||| ||||| || || || | Sbjct 373571 ACACAATTGATAATGTGAAGGCCAAAATTCAAGACAAGGAAGGGATTCCCCCAGACCAGC 373512 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||| || |||||||| || ||| | || ||| || || | | |||||||| | Sbjct 373511 AGCGACTGATATTTGCAGGGAAGCAACTTGAAGATGGAAGGACACTTGCTGATTATAACA 373452 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 |||| || || ||||| | ||| | || || || || || ||||||| Sbjct 373451 TACAGAAGGAGTCGACACTTCATCTGGTGTTGCGTTTGAGGGGAGGTA 373404 >seq50708 Length=321788 Score = 87.8 bits (96), Expect = 3e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| | ||||| |||| || || ||| || ||||| ||||| || |||||| Sbjct 282294 GACACCATTGACAATGTTAAAACAAAGATTCAAGACAAGGAAGGAATTCCTCCGGATCAA 282235 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||||| | |||||||| || |||||| | || ||| |||| | | |||||||| Sbjct 282234 CAAAGGTTGATTTTTGCTGGAAAACAACTCGAGGATGGGCGAACACTTGCTGATTATAAC 282175 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 || || || ||||| ||| ||||| | || || || | | |||||| Sbjct 282174 ATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGGT 282127 >seq50758 Length=122349 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| || || || ||||| || ||| | || || ||| | | Sbjct 118721 TGCAGATTTTTGTGAAAACGTTGACCGGGAAAACCATCACTTTGGAGGTGGAAAGTTCTG 118780 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| ||| ||| || || || || || ||||| || ||||| | Sbjct 118781 ATACTATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAGC 118840 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || ||||| || || ||||| || ||| || || | | |||||||||| Sbjct 118841 AGAGGCTGATCTTTGCGGGGAAGCAATTGGAAGATGGAAGGACTCTGGCTGATTATAATA 118900 Query 146212 TACAAAAAGAATCGAC 146227 | || || || || || Sbjct 118901 TTCAGAAGGAGTCCAC 118916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785644306893760