Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq27213 93.3 2e-14 seq27093 93.3 2e-14 seq11951 93.3 2e-14 seq10034 93.3 2e-14 seq4863 93.3 2e-14 seq35516 91.5 5e-14 seq48584 89.7 2e-13 seq42945 89.7 2e-13 seq20433 89.7 2e-13 seq10731 86.0 2e-12 seq52852 84.2 8e-12 seq51995 84.2 8e-12 seq50229 84.2 8e-12 seq46502 84.2 8e-12 seq36951 84.2 8e-12 seq34419 84.2 8e-12 seq26442 84.2 8e-12 seq23720 84.2 8e-12 seq13404 84.2 8e-12 seq49890 80.6 1e-10 >seq27213 Length=897 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 708 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 649 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 648 CTGCTCTACCCCGC 635 >seq27093 Length=236599 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 231828 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 231887 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 231888 CTGCTCTACCCCGC 231901 >seq11951 Length=219413 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 40734 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 40793 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 40794 CTGCTCTACCCCGC 40807 >seq10034 Length=2804 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 2627 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 2686 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 2687 CTGCTCTACCCCGC 2700 >seq4863 Length=7020 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 725 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 784 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 785 CTGCTCTACCCCGC 798 >seq35516 Length=62621 Score = 91.5 bits (100), Expect = 5e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 12853 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 12794 Query 50170 CTGCTCTACTCCGCA 50184 ||||||||| || || Sbjct 12793 CTGCTCTACCCCACA 12779 >seq48584 Length=83616 Score = 89.7 bits (98), Expect = 2e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| | Sbjct 55836 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAC 55895 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 55896 CTGCTCTACCCCGC 55909 >seq42945 Length=83106 Score = 89.7 bits (98), Expect = 2e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 14816 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 14757 Query 50170 CTGCTCTACTCC 50181 ||||||||| || Sbjct 14756 CTGCTCTACCCC 14745 >seq20433 Length=1215 Score = 89.7 bits (98), Expect = 2e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| | Sbjct 693 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAC 634 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 633 CTGCTCTACCCCGC 620 >seq10731 Length=261544 Score = 86.0 bits (94), Expect = 2e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 |||||||||| || ||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 243612 GTTGCGGAGGAGG-ATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 243670 Query 50170 CTGCTCTACTCC 50181 ||||||||| || Sbjct 243671 CTGCTCTACCCC 243682 >seq52852 Length=381555 Score = 84.2 bits (92), Expect = 8e-12 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| || ||||||| || Sbjct 374406 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCAAGCTACCAAA 374347 Query 50170 CTGCTCTAC 50178 ||||||||| Sbjct 374346 CTGCTCTAC 374338 >seq51995 Length=75368 Score = 84.2 bits (92), Expect = 8e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | |||||||| ||| | |||| ||| ||||||||| |||||||||| || Sbjct 16928 GTTGCGGAGACAAGATTTGAATCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 16987 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 16988 CTGCTCTACCCCGC 17001 >seq50229 Length=35389 Score = 84.2 bits (92), Expect = 8e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | |||||||| ||| | |||| ||| ||||||||| |||||||||| || Sbjct 20121 GTTGCGGAGACAAGATTTGAATCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 20062 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 20061 CTGCTCTACCCCGC 20048 >seq46502 Length=56217 Score = 84.2 bits (92), Expect = 8e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 42988 GTTGCGGAGACAAAATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 43047 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 43048 CTGCTCTACCCCGC 43061 >seq36951 Length=664 Score = 84.2 bits (92), Expect = 8e-12 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| || ||||||| || Sbjct 549 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCAAGCTACCAAA 490 Query 50170 CTGCTCTAC 50178 ||||||||| Sbjct 489 CTGCTCTAC 481 >seq34419 Length=127586 Score = 84.2 bits (92), Expect = 8e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 |||| |||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 79796 GTTGTGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 79855 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 79856 TTGCTCTACCCCGC 79869 >seq26442 Length=156440 Score = 84.2 bits (92), Expect = 8e-12 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 |||||| || | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 82785 GTTGCGAAGACAGGATTTGAACCCGTGACCTCTAGGTTATGAGCCTTGCGAGCTACCAAA 82844 Query 50170 CTGCTCTAC 50178 ||||||||| Sbjct 82845 CTGCTCTAC 82853 >seq23720 Length=134921 Score = 84.2 bits (92), Expect = 8e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 |||||| || ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 81501 GTTGCGAAGATAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 81560 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 81561 CTGCTCTACCCCGC 81574 >seq13404 Length=170268 Score = 84.2 bits (92), Expect = 8e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||| ||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 80782 GTTGCTGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 80723 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 80722 CTGCTCTAGCCCGC 80709 >seq49890 Length=35641 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||| ||| | |||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 34377 GTTGCTGAGACAGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 34318 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 34317 CTGCTCTAGCCCGC 34304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181488627449136