Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq48040 87.8 2e-12
seq51452 84.2 2e-11
>seq48040
Length=167738
Score = 87.8 bits (96), Expect = 2e-12
Identities = 86/110 (78%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987
|||| ||||| ||||||||||| || || ||| ||| |||||| | |||||| || |
Sbjct 54749 TTGATTCTTTCTGAATGTTGTAATCAGCCAGGGTCCGCCCATCTTCCAACTGTTTCCCAG 54690
Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC--GGTAA 132035
| | || || | ||| ||||| |||||||||||||||||||| |||||
Sbjct 54689 CAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATCCTGGTAA 54640
>seq51452
Length=252770
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/196 (69%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987
||||||| |||||||| ||||| || | ||| || ||| ||||||||||| || |
Sbjct 59159 TTGACTCCTTTTGAATATTGTAATCTGCGAGAGTATGCCCATCCTCGAGCTGTTTTCCTG 59218
Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047
|||| | ||| ||||||||||| || || |||||||| || ||||| ||| |
Sbjct 59219 CGAAGATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTGGCTTTAA 59278
Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107
| || | || || | ||| ||||||| || | || || |||||||| || |
Sbjct 59279 CATTGTCGATCGTGTCTGAACTCTCAACTTCGAGAGTTACGGTCTTGCCAGTCAGGGTCT 59338
Query 132108 TTATGAAAATCTGCAT 132123
| | || ||||||||
Sbjct 59339 TCACAAAGATCTGCAT 59354
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476294682502080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |