Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq51452 98.7 9e-16
seq19192 96.9 3e-15
seq50758 87.8 2e-12
seq50574 84.2 2e-11
>seq51452
Length=252770
Score = 98.7 bits (108), Expect = 9e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || || |||||||||||||||||| | |||||| | ||||| || |
Sbjct 59126 ATGCAAATTTTCGTTAAAACATTAACCGGAAAAACAATCACGTTGGAAGTTGAGAGCTCG 59067
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|||||||| || | || || |||||| ||||| || ||||| || || || ||
Sbjct 59066 GATACTATTGATAATGTTAAGACGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCAA 59007
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|||||||| |||| | || || ||| | ||||||| | | | | ||||| |||
Sbjct 59006 CAAAGACTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAAT 58947
Query 25355 ATTCAAAAAGAATCCAC 25371
|||||||| || || ||
Sbjct 58946 ATTCAAAAGGAGTCAAC 58930
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| ||||| |||||||| ||| | || || | ||||| || |
Sbjct 4521 ATGCAAATCTTTGTTAAAACCTTAACCGGGAAAACCATTACATTGGAAGTTGAGAGCTCG 4462
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || || || | || || ||||| ||||| || ||||| |||| || |||
Sbjct 4461 GACACAATTGATAATGTTAAGGCGAAAATCCAAGATAAGGAAGGTATCGCGCCAGACCAG 4402
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| || || |||| || || || ||| | ||||||| |||| | ||||| ||
Sbjct 4401 CAGAGGCTGATTTTCGCTGGGAAGCAATTAGAAGATGGAAGAACGCTGGCTGATTATAAC 4342
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401
|| || || ||||||||| |||| |||| | ||||||||||| ||
Sbjct 4341 ATCCAGAAGGAATCCACCCTTCACCTAGTTCTCAGATTGAGAGGTGG 4295
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233
|||||| || ||||| || || || || || || |||||||| | || || ||
Sbjct 58671 CATGCAGGTCTTTGTGAAGACGTTGACGGGGAAGACGATCACGTTGGAGGTGGAGAGTTC 58612
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
||||| || || | || || || || ||||| |||||||| || || || ||
Sbjct 58611 TGATACCATTGACAATGTGAAGGCCAAGATACAGGATAAGGAGGGTATCCCACCAGACCA 58552
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
||| ||||| |||| | || |||||| | ||||||| || | | || ||||| ||
Sbjct 58551 GCAGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGGAAGGACTCTCGCAGATTATAA 58492
Query 25354 TATTCAAAAAGAATCCACCATTCA 25377
||||||||| ||||||||| ||||
Sbjct 58491 TATTCAAAAGGAATCCACCCTTCA 58468
Score = 82.4 bits (90), Expect = 7e-11
Identities = 156/228 (68%), Gaps = 4/228 (2%)
Strand=Plus/Minus
Query 25147 TTATATAAGTAGTTT---TCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGG 25203
||||||| | ||||| || ||||| | ||||| | ||||| ||||| |||| ||
Sbjct 5007 TTATATAGG-AGTTTGGTTCGATTAATACAGATGCAGATCTTTGTTAAAACCCTAACTGG 4949
Query 25204 AAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAAT 25263
|||| | ||||| | ||||| ||| | || || || || | || || |||||
Sbjct 4948 AAAAACCATCACACTGGAAGTTGAAAGCTCGGACACCATAGACAATGTTAAGGCGAAAAT 4889
Query 25264 TACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACT 25323
|| || |||||||| || || |||||||| || || || | | || || |||||
Sbjct 4888 ACAAGACAAGGAGGGTATCCCACCGGATCAGCAGAGGCTGATATTTGCAGGGAAGCAACT 4829
Query 25324 CGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCAC 25371
||||||| | | | || ||||| ||||||||||| || || ||
Sbjct 4828 GGAAGATGGGCGTACTCTCGCAGATTATAATATTCAAAAGGAGTCAAC 4781
>seq19192
Length=430667
Score = 96.9 bits (106), Expect = 3e-15
Identities = 150/212 (71%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCA 25232
|||||| | ||||| ||||| ||||| || || ||||||| | ||||| || |||
Sbjct 373861 CATGCAGATTTTTGTTAAAACTTTAACGGGCAAGACGATCACCCTTGAAGTTGAGAGCTC 373802
Query 25233 ACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292
| ||||| ||||| | ||||| ||| || || || |||||||| || || || |
Sbjct 373801 A-GATACCATCGACAATGTAAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACC 373743
Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352
|||| || | || | | || |||||||| || |||| || | | |||||||
Sbjct 373742 AGCAGAGGTTGATATTTGCTGGGAAACAACTTGAGGATGGAAGGACCCTTGCAGATTACA 373683
Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTG 25384
||||||| || ||||| ||| ||||||| |||
Sbjct 373682 ATATTCAGAAGGAATCAACCCTTCATTTGGTG 373651
>seq50758
Length=122349
Score = 87.8 bits (96), Expect = 2e-12
Identities = 148/212 (70%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233
||||||| | ||||| ||||| ||||||| ||| | ||||| | ||||||||| |
Sbjct 118035 CATGCAAATCTTTGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTC 118094
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
||| || || || | || || || ||| ||||||||||| || || || |||||
Sbjct 118095 CGACACAATTGACAACGTTAAGGCGAAGATTCAGGATAAAGAGGGAATCCCACCAGATCA 118154
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACA 25352
||| || | || | | |||||||| | ||||||| | | | ||| |||||||
Sbjct 118155 GCAGAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGTACCCT-AGCTGATTACA 118213
Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTG 25384
| ||||| || || || || |||| || |||
Sbjct 118214 ACATTCAGAAGGAGTCGACTCTTCACTTGGTG 118245
>seq50574
Length=377344
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | || || ||||| | |||||||| | ||||| |||| ||||| |
Sbjct 95275 ATGCAGATCTTCGTGAAAACCCTTACCGGAAAGACCATCACTCTCGAGGTCGAGAGTTCC 95216
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || ||||| | |||||| ||||| || || || || || || || ||||||
Sbjct 95215 GACACAATCGACAACGTAAAAGCCAAAATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 95156
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||||| || || | || |||||| || || || || | | | | || |||||||||
Sbjct 95155 CAAAGGCTTATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGTACTCTCGCCGATTACAAC 95096
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383
|| || || ||||| ||| |||| || ||
Sbjct 95095 ATCCAGAAGGAATCTACCCTTCACTTGGT 95067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444798812808960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |