Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq51452 98.7 9e-16 seq19192 96.9 3e-15 seq50758 87.8 2e-12 seq50574 84.2 2e-11 >seq51452 Length=252770 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || |||||||||||||||||| | |||||| | ||||| || | Sbjct 59126 ATGCAAATTTTCGTTAAAACATTAACCGGAAAAACAATCACGTTGGAAGTTGAGAGCTCG 59067 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || || |||||| ||||| || ||||| || || || || Sbjct 59066 GATACTATTGATAATGTTAAGACGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCAA 59007 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| |||| | || || ||| | ||||||| | | | | ||||| ||| Sbjct 59006 CAAAGACTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAAT 58947 Query 25355 ATTCAAAAAGAATCCAC 25371 |||||||| || || || Sbjct 58946 ATTCAAAAGGAGTCAAC 58930 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| |||||||| ||| | || || | ||||| || | Sbjct 4521 ATGCAAATCTTTGTTAAAACCTTAACCGGGAAAACCATTACATTGGAAGTTGAGAGCTCG 4462 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || ||||| ||||| || ||||| |||| || ||| Sbjct 4461 GACACAATTGATAATGTTAAGGCGAAAATCCAAGATAAGGAAGGTATCGCGCCAGACCAG 4402 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || |||| || || || ||| | ||||||| |||| | ||||| || Sbjct 4401 CAGAGGCTGATTTTCGCTGGGAAGCAATTAGAAGATGGAAGAACGCTGGCTGATTATAAC 4342 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || ||||||||| |||| |||| | ||||||||||| || Sbjct 4341 ATCCAGAAGGAATCCACCCTTCACCTAGTTCTCAGATTGAGAGGTGG 4295 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| || ||||| || || || || || || |||||||| | || || || Sbjct 58671 CATGCAGGTCTTTGTGAAGACGTTGACGGGGAAGACGATCACGTTGGAGGTGGAGAGTTC 58612 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || || || || ||||| |||||||| || || || || Sbjct 58611 TGATACCATTGACAATGTGAAGGCCAAGATACAGGATAAGGAGGGTATCCCACCAGACCA 58552 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||||| |||| | || |||||| | ||||||| || | | || ||||| || Sbjct 58551 GCAGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGGAAGGACTCTCGCAGATTATAA 58492 Query 25354 TATTCAAAAAGAATCCACCATTCA 25377 ||||||||| ||||||||| |||| Sbjct 58491 TATTCAAAAGGAATCCACCCTTCA 58468 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/228 (68%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 25147 TTATATAAGTAGTTT---TCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGG 25203 ||||||| | ||||| || ||||| | ||||| | ||||| ||||| |||| || Sbjct 5007 TTATATAGG-AGTTTGGTTCGATTAATACAGATGCAGATCTTTGTTAAAACCCTAACTGG 4949 Query 25204 AAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAAT 25263 |||| | ||||| | ||||| ||| | || || || || | || || ||||| Sbjct 4948 AAAAACCATCACACTGGAAGTTGAAAGCTCGGACACCATAGACAATGTTAAGGCGAAAAT 4889 Query 25264 TACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACT 25323 || || |||||||| || || |||||||| || || || | | || || ||||| Sbjct 4888 ACAAGACAAGGAGGGTATCCCACCGGATCAGCAGAGGCTGATATTTGCAGGGAAGCAACT 4829 Query 25324 CGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCAC 25371 ||||||| | | | || ||||| ||||||||||| || || || Sbjct 4828 GGAAGATGGGCGTACTCTCGCAGATTATAATATTCAAAAGGAGTCAAC 4781 >seq19192 Length=430667 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCA 25232 |||||| | ||||| ||||| ||||| || || ||||||| | ||||| || ||| Sbjct 373861 CATGCAGATTTTTGTTAAAACTTTAACGGGCAAGACGATCACCCTTGAAGTTGAGAGCTC 373802 Query 25233 ACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | ||||| ||||| | ||||| ||| || || || |||||||| || || || | Sbjct 373801 A-GATACCATCGACAATGTAAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACC 373743 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 |||| || | || | | || |||||||| || |||| || | | ||||||| Sbjct 373742 AGCAGAGGTTGATATTTGCTGGGAAACAACTTGAGGATGGAAGGACCCTTGCAGATTACA 373683 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||||||| || ||||| ||| ||||||| ||| Sbjct 373682 ATATTCAGAAGGAATCAACCCTTCATTTGGTG 373651 >seq50758 Length=122349 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| ||||| ||||||| ||| | ||||| | ||||||||| | Sbjct 118035 CATGCAAATCTTTGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTC 118094 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || || || | || || || ||| ||||||||||| || || || ||||| Sbjct 118095 CGACACAATTGACAACGTTAAGGCGAAGATTCAGGATAAAGAGGGAATCCCACCAGATCA 118154 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACA 25352 ||| || | || | | |||||||| | ||||||| | | | ||| ||||||| Sbjct 118155 GCAGAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGTACCCT-AGCTGATTACA 118213 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTG 25384 | ||||| || || || || |||| || ||| Sbjct 118214 ACATTCAGAAGGAGTCGACTCTTCACTTGGTG 118245 >seq50574 Length=377344 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| | |||||||| | ||||| |||| ||||| | Sbjct 95275 ATGCAGATCTTCGTGAAAACCCTTACCGGAAAGACCATCACTCTCGAGGTCGAGAGTTCC 95216 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | |||||| ||||| || || || || || || || |||||| Sbjct 95215 GACACAATCGACAACGTAAAAGCCAAAATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 95156 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| || || | || |||||| || || || || | | | | || ||||||||| Sbjct 95155 CAAAGGCTTATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGTACTCTCGCCGATTACAAC 95096 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || || ||||| ||| |||| || || Sbjct 95095 ATCCAGAAGGAATCTACCCTTCACTTGGT 95067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444798812808960