Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq44697 156 6e-32 seq38302 156 6e-32 >seq44697 Length=182102 Score = 156 bits (172), Expect = 6e-32 Identities = 355/524 (68%), Gaps = 14/524 (3%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | |||| | || |||||||||||| |||||| | || |||| || Sbjct 113844 TGTTCCCAATTCAATACCCACAAATTTGGGAAATGTACAAAAAAGCCTTAG-CCTCTTTC 113786 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACA-CGGTCCACTGGGTGTCGCTGAGCGA 1455871 ||||| || || || ||||| | | || | | ||| |||||| | || | Sbjct 113785 TGGACTGCTGAAGAAGTCGATTTGTCTTCTGATAACCGTC-ACTGGGAAACCCTAACACC 113727 Query 1455872 CGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCG 1455931 || || | |||||||||| |||||||| ||||||||| |||||| || ||||||| Sbjct 113726 CGGTGAAAGGCATTTCATCACTCACGTCCTTGCCTTTTTT-GCCGCCTCAGACGGCATCG 113668 Query 1455932 TGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA-TTGCCAGAGGCACGTTTG 1455990 | || ||||| ||||| | || |||||||| |||||| ||||| ||||| ||| Sbjct 113667 TTTTAGAAAACCTAGCCGGAAGGTTCATGAAAGAAGTCCAAGTTGCC-GAGGCCCGTGCT 113609 Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050 || ||||| ||||| ||||| || |||||||||||||| || | ||| || || | Sbjct 113608 TTCTACGGCTTCCAAATCGCGATTGAAAACATCCACTCCGAGATGTACAGTCTGCTTCTA 113549 Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110 || | ||| |||||||| | | ||| || | | || ||||| | || || | Sbjct 113548 GAGTCGTACATCAAGGACTCTGACGAAAAAAGCAGATTATTCCGCGCAGTTGAGACTATC 113489 Query 1456111 CCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGAC 1456170 || | || ||| ||||| | ||||| | |||||| || || ||| Sbjct 113488 CCCTGTGTTGAGAAGAAGGCGAAGTGGGCCCTACGTTGGATC------GACGGTTCCGAA 113435 Query 1456171 AC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGT 1456228 || ||||| ||||| | || | ||||| | || || || || |||||||| || || Sbjct 113434 ACATTTGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTCTCCGGAAGC 113375 Query 1456229 TTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 || || || || || ||| | || ||||| || | ||||| || Sbjct 113374 TTTTGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGG 113331 >seq38302 Length=59671 Score = 156 bits (172), Expect = 6e-32 Identities = 353/523 (67%), Gaps = 12/523 (2%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | |||| | || |||||||||||| |||||| | || |||| || Sbjct 23664 TGTTCCCAATTCAATACCCACAAATTTGGGAAATGTACAAAAAAGCCTTAG-CCTCTTTC 23606 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872 ||||| || || || ||||| | |||| || ||||||| | || | | Sbjct 23605 TGGACTGCGGAAGAAGTCGATTTATCTTCCGATACCCGTCACTGGGAAACCCTAACACCC 23546 Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 | || | |||||||||| |||||||| ||||||||| |||||| || |||||||| Sbjct 23545 GGTGAAAGGCATTTCATCACTCACGTCCTTGCCTTTTTT-GCCGCCTCAGACGGCATCGT 23487 Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA-TTGCCAGAGGCACGTTTGT 1455991 || ||||| ||||| | || |||||||| |||||| ||||| ||||| ||| | Sbjct 23486 TTTAGAAAACCTAGCCGGGAGGTTCATGAAAGAAGTCCAAGTTGCC-GAGGCCCGTGCTT 23428 Query 1455992 TTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCG 1456051 | ||||| ||||| ||||| || |||||||||||||| || | ||| || || | | Sbjct 23427 TCTACGGCTTCCAAATCGCGATTGAAAACATCCACTCCGAGATGTACAGTCTGCTTCTAG 23368 Query 1456052 ACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGC 1456111 | | ||| |||||||| | | ||| || | | || ||||| | || || | | Sbjct 23367 AGTCGTACATCAAGGACTCTGACGAAAAAAGCAGATTATTCCGCGCAGTTGAGACTATTC 23308 Query 1456112 CGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA 1456171 | | || ||| ||||| | ||||| | |||||| || || ||| | Sbjct 23307 CCTGTGTTGAGAAGAAGGCGAAGTGGGCCCTACGTTGGATC------GACGGTTCCGAAA 23254 Query 1456172 C-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTT 1456229 | ||||| ||||| | || | ||| | | || || || || |||||||| || || | Sbjct 23253 CATTTGCGGAGCGTTTGGTTGCATTTTCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCT 23194 Query 1456230 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 | || || || || ||| | || ||||| || | ||||| || Sbjct 23193 TTTGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGG 23151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7172686906750736