Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq44697 156 6e-32
seq38302 156 6e-32
>seq44697
Length=182102
Score = 156 bits (172), Expect = 6e-32
Identities = 355/524 (68%), Gaps = 14/524 (3%)
Strand=Plus/Minus
Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812
||||||| || | |||| | || |||||||||||| |||||| | || |||| ||
Sbjct 113844 TGTTCCCAATTCAATACCCACAAATTTGGGAAATGTACAAAAAAGCCTTAG-CCTCTTTC 113786
Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACA-CGGTCCACTGGGTGTCGCTGAGCGA 1455871
||||| || || || ||||| | | || | | ||| |||||| | || |
Sbjct 113785 TGGACTGCTGAAGAAGTCGATTTGTCTTCTGATAACCGTC-ACTGGGAAACCCTAACACC 113727
Query 1455872 CGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCG 1455931
|| || | |||||||||| |||||||| ||||||||| |||||| || |||||||
Sbjct 113726 CGGTGAAAGGCATTTCATCACTCACGTCCTTGCCTTTTTT-GCCGCCTCAGACGGCATCG 113668
Query 1455932 TGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA-TTGCCAGAGGCACGTTTG 1455990
| || ||||| ||||| | || |||||||| |||||| ||||| ||||| |||
Sbjct 113667 TTTTAGAAAACCTAGCCGGAAGGTTCATGAAAGAAGTCCAAGTTGCC-GAGGCCCGTGCT 113609
Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050
|| ||||| ||||| ||||| || |||||||||||||| || | ||| || || |
Sbjct 113608 TTCTACGGCTTCCAAATCGCGATTGAAAACATCCACTCCGAGATGTACAGTCTGCTTCTA 113549
Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110
|| | ||| |||||||| | | ||| || | | || ||||| | || || |
Sbjct 113548 GAGTCGTACATCAAGGACTCTGACGAAAAAAGCAGATTATTCCGCGCAGTTGAGACTATC 113489
Query 1456111 CCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGAC 1456170
|| | || ||| ||||| | ||||| | |||||| || || |||
Sbjct 113488 CCCTGTGTTGAGAAGAAGGCGAAGTGGGCCCTACGTTGGATC------GACGGTTCCGAA 113435
Query 1456171 AC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGT 1456228
|| ||||| ||||| | || | ||||| | || || || || |||||||| || ||
Sbjct 113434 ACATTTGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTCTCCGGAAGC 113375
Query 1456229 TTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272
|| || || || || ||| | || ||||| || | ||||| ||
Sbjct 113374 TTTTGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGG 113331
>seq38302
Length=59671
Score = 156 bits (172), Expect = 6e-32
Identities = 353/523 (67%), Gaps = 12/523 (2%)
Strand=Plus/Minus
Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812
||||||| || | |||| | || |||||||||||| |||||| | || |||| ||
Sbjct 23664 TGTTCCCAATTCAATACCCACAAATTTGGGAAATGTACAAAAAAGCCTTAG-CCTCTTTC 23606
Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872
||||| || || || ||||| | |||| || ||||||| | || | |
Sbjct 23605 TGGACTGCGGAAGAAGTCGATTTATCTTCCGATACCCGTCACTGGGAAACCCTAACACCC 23546
Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932
| || | |||||||||| |||||||| ||||||||| |||||| || ||||||||
Sbjct 23545 GGTGAAAGGCATTTCATCACTCACGTCCTTGCCTTTTTT-GCCGCCTCAGACGGCATCGT 23487
Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA-TTGCCAGAGGCACGTTTGT 1455991
|| ||||| ||||| | || |||||||| |||||| ||||| ||||| ||| |
Sbjct 23486 TTTAGAAAACCTAGCCGGGAGGTTCATGAAAGAAGTCCAAGTTGCC-GAGGCCCGTGCTT 23428
Query 1455992 TTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCG 1456051
| ||||| ||||| ||||| || |||||||||||||| || | ||| || || | |
Sbjct 23427 TCTACGGCTTCCAAATCGCGATTGAAAACATCCACTCCGAGATGTACAGTCTGCTTCTAG 23368
Query 1456052 ACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGC 1456111
| | ||| |||||||| | | ||| || | | || ||||| | || || | |
Sbjct 23367 AGTCGTACATCAAGGACTCTGACGAAAAAAGCAGATTATTCCGCGCAGTTGAGACTATTC 23308
Query 1456112 CGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA 1456171
| | || ||| ||||| | ||||| | |||||| || || ||| |
Sbjct 23307 CCTGTGTTGAGAAGAAGGCGAAGTGGGCCCTACGTTGGATC------GACGGTTCCGAAA 23254
Query 1456172 C-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTT 1456229
| ||||| ||||| | || | ||| | | || || || || |||||||| || || |
Sbjct 23253 CATTTGCGGAGCGTTTGGTTGCATTTTCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCT 23194
Query 1456230 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272
| || || || || ||| | || ||||| || | ||||| ||
Sbjct 23193 TTTGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGG 23151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7172686906750736
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |