Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq38302 185 1e-41 seq44697 181 1e-40 seq32446 116 5e-21 seq49945 100 4e-16 >seq38302 Length=59671 Score = 185 bits (204), Expect = 1e-41 Identities = 574/876 (66%), Gaps = 18/876 (2%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 ||||| || || ||||| | ||||| || |||||||| || |||| || || Sbjct 22800 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 22859 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| ||||||||||||| ||||| || || ||| | || || | | | Sbjct 22860 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATTATAACCCAAAGCATCCAAC 22919 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 |||||||| || |||||||| |||||| | |||||| || | ||||||||| | || Sbjct 22920 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 22979 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 | || || || || | |||||| |||| || || || || |||| | ||| Sbjct 22980 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATC 23039 Query 39566 GATGTTACTACCTCATCACTCGGT---GGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 | ||| || ||| | | | ||| ||| | || || | || ||| Sbjct 23040 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTCAACAAACTATAAAGCA---AACAAGCG 23096 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || ||||| || | || || || || |||||| ||||| || || || | ||||||| Sbjct 23097 AAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGC 23156 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCC 39741 |||| || |||||||| | ||| ||||| ||| |||||| | ||||| || || || || Sbjct 23157 ATTAACCCCCGCTTTTTTAACCAGAATATAGCA-CAAAAGCTTCCAGAGAAAAAAATACC 23215 Query 39742 TTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT-GT--ATCCA 39798 ||| || | ||||||||| | | ||| || || | || || | || ||||| Sbjct 23216 TTCCACACAAGAAAATGCAACCAAACGCTC--CGCAAAT-GTTTCGGAACCGTCGATCCA 23272 Query 39799 CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 | ||||| | || ||||||| ||||| || || || || | || || | Sbjct 23273 ACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGAATAGTCTCAACTGCGCGGAATA- 23331 Query 39859 ATAATG--TTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCT 39916 || || |||||| ||| || || | || | |||| | |||||| ||||| || Sbjct 23332 ATC-TGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCG 23390 Query 39917 GAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGT 39976 || ||||||||||||||||| || || || ||||| ||| | || || | || ||| Sbjct 23391 GAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGG 23450 Query 39977 ACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAA 40036 || ||| || || | || | ||||| || || || || ||||||||| Sbjct 23451 ACTTCTTTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAA 23510 Query 40037 AATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTG 40096 || || | || || | || |||| ||||| ||||||| | | | ||||| | | Sbjct 23511 AAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGG 23570 Query 40097 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTAC 40156 |||| |||| ||| |||||||| || ||||| || || || || ||||||||| Sbjct 23571 GTATCGGAAGATAAATCGACTTCTTCCGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTAC 23630 Query 40157 ATGTTCCATATATCACGATATTGTATTGGAAAAATA 40192 || | ||| || | | ||||| ||||| || ||| Sbjct 23631 ATTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 23666 >seq44697 Length=182102 Score = 181 bits (200), Expect = 1e-40 Identities = 574/876 (66%), Gaps = 18/876 (2%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 ||||| || || ||||| | ||||| || |||||||| || |||| || || Sbjct 112980 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 113039 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| ||||||||||||| ||||| || || | | | || || | | | Sbjct 113040 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAAC 113099 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 |||||||| || |||||||| |||||| | |||||| || | ||||||||| | || Sbjct 113100 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 113159 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 | || || || || | |||||| |||| || || || || |||| | || Sbjct 113160 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 113219 Query 39566 GATGTTACTACCTCATCACTCGG-TGGATGC--AATAAATGTTTAAACATTAAGCAGGCG 39622 | ||| || ||| | | | | | || ||| | || || | || || Sbjct 113220 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAACTATAAAGCA---AACAAGCA 113276 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || ||||| || | || || || ||| |||||| ||||| || || || | ||||||| Sbjct 113277 AAATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAGAAGGTTAATCCAGGC 113336 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCC 39741 |||| || |||||||| | ||| ||||| ||| |||||| | || || || || || || Sbjct 113337 ATTAACCCCCGCTTTTTTAACCAGAATATAGCA-CAAAAGCTTCCGGAGAAAAAAATACC 113395 Query 39742 TTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT-GT--ATCCA 39798 ||| || ||||||||||| | | ||| || || | || || | || ||||| Sbjct 113396 TTCCACACAAGCAAATGCAACCAAACGCTC--CGCAAAT-GTTTCGGAACCGTCGATCCA 113452 Query 39799 CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 | ||||| | || ||||||| ||||| || || || || | || || | Sbjct 113453 ACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATA- 113511 Query 39859 ATAATG--TTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCT 39916 || || |||||| ||| || || | || | |||| | |||||| ||||| || Sbjct 113512 ATC-TGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCG 113570 Query 39917 GAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGT 39976 || ||||||||||||||||| || || || ||||| ||| | || || | || ||| Sbjct 113571 GAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGG 113630 Query 39977 ACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAA 40036 || ||| || ||| | || | ||||| || || || || ||||||||| Sbjct 113631 ACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAA 113690 Query 40037 AATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTG 40096 || || | || || | || |||| ||||| ||||||| | | | ||||| | | Sbjct 113691 AAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGG 113750 Query 40097 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTAC 40156 |||| || | ||| ||||||||||| ||||| || || || || ||||||||| Sbjct 113751 TTATCAGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTAC 113810 Query 40157 ATGTTCCATATATCACGATATTGTATTGGAAAAATA 40192 || | ||| || | | ||||| ||||| || ||| Sbjct 113811 ATTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 113846 >seq32446 Length=65746 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | |||| ||||||| |||| | || | ||||| || ||||| ||| Sbjct 52556 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACGCGTAGCATTGGTATAATTCCA 52497 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | ||||| |||||| ||||||||| || | | |||||||| |||||| Sbjct 52496 TTTGATGTCCCATTAGTTCCACGAATATAACTCCCAGTACCACGAATATTGTGCATAGAT 52437 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || |||||||| || ||| || | |||||| || | ||||||||||| Sbjct 52436 ACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATATG 52377 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || ||||| ||| ||||| | ||| || |||||| Sbjct 52376 CCCTCAATACTATCTTCTTTCATGCATACAAGGAAGCAGCTA 52335 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||| | || ||||| || |||||||||||| ||| ||| | || || Sbjct 52239 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCAAATG 52180 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 || || | ||||| ||||| ||||| || || ||||| | | || | ||||| Sbjct 52179 ATAAGTCTTGATAGCAGATTCAATATCATCCTTGTGGATTCCAACAGAAACTCTCATCAG 52120 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 |||||| || || | |||||| || ||| || || || ||||| || |||| Sbjct 52119 CATATGTTGTGGCCTTTCTACAACATTTCCATTAATCTTTAAGAGGTAAGACCGCTCCAA 52060 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || |||||| || || || || || Sbjct 52059 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTGTCATATATGAT 52012 >seq49945 Length=41976 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| || ||||||||||| |||||||| |||||||||||| || ||| | || || Sbjct 17068 AGTTCCAGCGTTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 17127 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||||| | || | ||||| ||||| || || || || | | || | ||||| Sbjct 17128 ATATGTCTTGATGACAGATTCAATATCATCCTTGTGGATCCCAACAGATACTCTCATCAG 17187 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | |||||| |||| | || || || ||||| || | || || Sbjct 17188 CATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAAG 17247 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || ||||||||| || || || || Sbjct 17248 GGTTTTGAAACCAAAGTAATCATAATCAAAGTCTCTGTCATATATGAT 17295 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | ||||| ||||||| ||| | || | |||||| |||| ||| ||| Sbjct 16647 CCTCCTTGGTCAACATATCTAGCAGTGTCATTGAATACACGCAGCATAGGAACAATTCCA 16706 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||||||| ||| ||||| || | || || || || | ||| Sbjct 16707 TTTGATGTCCCATTTGTTCCACGAATGTAACTCCCAGTAGCACGTATGTTGTGCACAGAA 16766 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || ||||| || || ||| || | |||||| || | || ||||||||| Sbjct 16767 ACTCCAATTCCCCCAGCTGATTTGCTAATAACAGCACACTCCTTAAGAGTATCATATATA 16826 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || || || ||| ||||| | || || |||||| Sbjct 16827 CCCTCAATACTGTCCTCTTTCATGCATATCAGGAAGCAGCTA 16868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686452623865920