Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq44697 156 3e-33
>seq44697
Length=182102
Score = 156 bits (172), Expect = 3e-33
Identities = 569/876 (65%), Gaps = 25/876 (3%)
Strand=Plus/Minus
Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766
|||| ||||||||||| | | || ||| |||||||||||||||| || || || |
Sbjct 113844 TGTTCCCAATTCAATACCCACAAATTTGGGAAATGTACAAAAAAGCCTTAGCCTCTTTCT 113785
Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA-CATTGGATTGCATTAAAACCA 43825
|||| || |||||||| |||||| || || | | | || ||| | ||| |||
Sbjct 113784 GGACTGCTGAAGAAGTCGATTTGTCTTCTGA-TAACCGTCACTGGGAAACCCTAACACCC 113726
Query 43826 CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885
|||| ||||| || || || | || |||||||| || ||||| || ||
Sbjct 113725 GGTGAAAGGCATTTCATCACTCACGTCCTTGCCTTTTTTGCCGCCTCAGACGGCATCGTT 113666
Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945
||||| | | | |||| | ||||||| ||| | | || || || |||
Sbjct 113665 TTAGAAAACCTAGCCGGAAGGTTCATGAAAGAAGTCCAAGTTGCCGAGGCCCGTGCTTTC 113606
Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005
|| || || ||||| || || ||||| || || || || ||||||||||| || ||||
Sbjct 113605 TACGGCTTCCAAATCGCGATTGAAAACATCCACTCCGAGATGTACAGTCTGCTTCTAGAG 113546
Query 44006 ACGTACATCAAAGATGGGCACGAGAA--GCATCGATTGTTTAATGCGATAGAAACAGTAC 44063
|||||||||| || |||| || ||| |||| || || | || || | |
Sbjct 113545 TCGTACATCAAGGACTCTGACGAAAAAAGCA--GATTATTCCGCGCAGTTGAGACTATCC 113488
Query 44064 C-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA---TTCAAATGATTCT 44119
| || | | | | | || || | |||||||| ||||| | ||| || |
Sbjct 113487 CCTGTGTTGAGA-AGAAGGCGAAGTGGGCCCTACGTTGGATCGACGGTTCC---GAAACA 113432
Query 44120 TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTT 44179
|||| || || | || || ||||| ||||||||| ||||| || || ||| |||
Sbjct 113431 TTTGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTCTCCGGAAGCTTT 113372
Query 44180 GCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAG 44239
|| ||||| |||||||| || || || || |||||||| || || || || || |||
Sbjct 113371 TGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACCTTCTCGAACGAG 113312
Query 44240 TTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTA 44299
||||| | | || ||||| || || || ||||||||||| ||| | | | | ||
Sbjct 113311 TTAATTTCTAGGGACGAAGGTTTGCACTGTGATTTTGCTTGTTTGCTTTATAGTTTGTTA 113252
Query 44300 GGAGACGATAAGCCTTCATGTAAGAC-AATTACAGATATTGTTGTAGAGGCAGTAAAGAT 44358
| |||| ||| ||| || || | ||| | ||||||| ||| || || ||||
Sbjct 113251 AG-GACG--AAG-CTTACTGAGGAACGAGTTAAGGGAATTGTTGCAGATGCTGTGGAGAT 113196
Query 44359 AGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTT 44418
|||| || ||| || || | ||| | | |||||||||| | |||
Sbjct 113195 AGAAAGGGAGTTTGTGTGTGATGCGCTGCCTTGTGCGCTGGTGGGAATGAATGGAGATTT 113136
Query 44419 GATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGA---ACTGGGTTGCGA 44475
||||| | |||| ||||||| | || ||| | | | ||||| |||||| ||
Sbjct 113135 GATGAGCAAATACATTGAATTTGTGGCTGATAG---ATTGTTGGATGCTTTGGGTTATGA 113079
Query 44476 TAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAA 44535
||| || | || || || |||||||||| ||||| ||| || |||| ||
Sbjct 113078 TAAGTTGTACAATGCTCAGAATCCGTTTGATTGGATGGAGCTGATTAGTTTACAAGGGAA 113019
Query 44536 AACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571
|| || || ||||| || | ||||| || |||||
Sbjct 113018 GACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCA 112983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397198648233640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |