Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq44697 156 3e-33 >seq44697 Length=182102 Score = 156 bits (172), Expect = 3e-33 Identities = 569/876 (65%), Gaps = 25/876 (3%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||||||||| | | || ||| |||||||||||||||| || || || | Sbjct 113844 TGTTCCCAATTCAATACCCACAAATTTGGGAAATGTACAAAAAAGCCTTAGCCTCTTTCT 113785 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA-CATTGGATTGCATTAAAACCA 43825 |||| || |||||||| |||||| || || | | | || ||| | ||| ||| Sbjct 113784 GGACTGCTGAAGAAGTCGATTTGTCTTCTGA-TAACCGTCACTGGGAAACCCTAACACCC 113726 Query 43826 CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 |||| ||||| || || || | || |||||||| || ||||| || || Sbjct 113725 GGTGAAAGGCATTTCATCACTCACGTCCTTGCCTTTTTTGCCGCCTCAGACGGCATCGTT 113666 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 ||||| | | | |||| | ||||||| ||| | | || || || ||| Sbjct 113665 TTAGAAAACCTAGCCGGAAGGTTCATGAAAGAAGTCCAAGTTGCCGAGGCCCGTGCTTTC 113606 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 || || || ||||| || || ||||| || || || || ||||||||||| || |||| Sbjct 113605 TACGGCTTCCAAATCGCGATTGAAAACATCCACTCCGAGATGTACAGTCTGCTTCTAGAG 113546 Query 44006 ACGTACATCAAAGATGGGCACGAGAA--GCATCGATTGTTTAATGCGATAGAAACAGTAC 44063 |||||||||| || |||| || ||| |||| || || | || || | | Sbjct 113545 TCGTACATCAAGGACTCTGACGAAAAAAGCA--GATTATTCCGCGCAGTTGAGACTATCC 113488 Query 44064 C-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA---TTCAAATGATTCT 44119 | || | | | | | || || | |||||||| ||||| | ||| || | Sbjct 113487 CCTGTGTTGAGA-AGAAGGCGAAGTGGGCCCTACGTTGGATCGACGGTTCC---GAAACA 113432 Query 44120 TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTT 44179 |||| || || | || || ||||| ||||||||| ||||| || || ||| ||| Sbjct 113431 TTTGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTCTCCGGAAGCTTT 113372 Query 44180 GCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAG 44239 || ||||| |||||||| || || || || |||||||| || || || || || ||| Sbjct 113371 TGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACCTTCTCGAACGAG 113312 Query 44240 TTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTA 44299 ||||| | | || ||||| || || || ||||||||||| ||| | | | | || Sbjct 113311 TTAATTTCTAGGGACGAAGGTTTGCACTGTGATTTTGCTTGTTTGCTTTATAGTTTGTTA 113252 Query 44300 GGAGACGATAAGCCTTCATGTAAGAC-AATTACAGATATTGTTGTAGAGGCAGTAAAGAT 44358 | |||| ||| ||| || || | ||| | ||||||| ||| || || |||| Sbjct 113251 AG-GACG--AAG-CTTACTGAGGAACGAGTTAAGGGAATTGTTGCAGATGCTGTGGAGAT 113196 Query 44359 AGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTT 44418 |||| || ||| || || | ||| | | |||||||||| | ||| Sbjct 113195 AGAAAGGGAGTTTGTGTGTGATGCGCTGCCTTGTGCGCTGGTGGGAATGAATGGAGATTT 113136 Query 44419 GATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGA---ACTGGGTTGCGA 44475 ||||| | |||| ||||||| | || ||| | | | ||||| |||||| || Sbjct 113135 GATGAGCAAATACATTGAATTTGTGGCTGATAG---ATTGTTGGATGCTTTGGGTTATGA 113079 Query 44476 TAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAA 44535 ||| || | || || || |||||||||| ||||| ||| || |||| || Sbjct 113078 TAAGTTGTACAATGCTCAGAATCCGTTTGATTGGATGGAGCTGATTAGTTTACAAGGGAA 113019 Query 44536 AACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 || || || ||||| || | ||||| || ||||| Sbjct 113018 GACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCA 112983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397198648233640