Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq51452 98.7 8e-16
seq50758 96.9 3e-15
seq32633 87.8 2e-12
>seq51452
Length=252770
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || |||||||||||||| || | | || | || ||||||||||| ||
Sbjct 59158 GTTGACTCCTTTTGAATATTGTAATCTGCGAGAGTATGCCCATCCTCGAGCTGTTTTCCT 59217
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | || | ||| |||||||| || || | ||| ||||| || ||| ||| |||
Sbjct 59218 GCGAAGATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTGGCTTTA 59277
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||||| |||||||| ||||||| | ||||| ||||| ||
Sbjct 59278 ACATTGTCGATCGTGTCTGAACTCTCAACTTCGAGAGTTACGGTCTTGCCAGTCAGGGTC 59337
Query 27231 TTCACAAAGATTTGCAT 27247
||||||||||| |||||
Sbjct 59338 TTCACAAAGATCTGCAT 59354
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| || | ||||| || || | ||| | ||||| || || || ||||||||||| |
Sbjct 57988 CCACCCCTCAACCTCAGCACAAGATGGAGAGTAGACTCCTTCTGGATATTGTAGTCCGCC 58047
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | | | || || | |||||| || || | ||||| | ||| || ||||||||
Sbjct 58048 AGTGTCCTACCATCCTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGCGGA 58107
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| ||| |||||||| ||||| |||| | || | ||||||| | ||||||
Sbjct 58108 ATACCTTCTTTATCCTGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAACT 58167
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| | || || | || ||||| | ||||| ||||||||||||||
Sbjct 58168 TCCAATGTGATGGTCTTTCCCGTTAAGGTTTTAACAAAGATTTGCAT 58214
>seq50758
Length=122349
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTC 27097
||||| || | ||||| || || || || ||||||||| || ||| || |||||||
Sbjct 118016 ACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGC-CGTCTTC 117958
Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157
|||||| || |||||| | || || | ||| || ||||| || | || || || ||
Sbjct 117957 GAGCTGCTTTCCGGCGAATATCAGCCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCCTG 117898
Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217
||||| || | | | || | |||||| | | |||||| || || || || | |||
Sbjct 117897 AATCTTCGCCTTAACGTTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTTTT 117838
Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || |||||||||||||| |||||
Sbjct 117837 ACCGGTTAGGGTTTTCACAAAGATCTGCAT 117808
>seq32633
Length=132462
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
||||| | |||||| | |||||||| | || || ||||| || || || || ||
Sbjct 60430 CCTCCCCTCAACCGGAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTATAATCAGCA 60489
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | | | | || || ||||| ||||| || |||| | |||||| || ||||| ||
Sbjct 60490 AGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATTAAACGCTGCTGGTCCGGGGGA 60549
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| ||| ||||| || |||||| ||||| | || | || |||| ||||||
Sbjct 60550 ATACCTTCTTTGTCTTGGATCTTTGCTTTCACATTATCAATTGTATCTGAACTCTCAACT 60609
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || || || | || || |||| || ||||||||||| ||||||
Sbjct 60610 TCCAGCGTGATTGTCTTCCCAGTCAACGTCTTCACAAAGATCTGCATA 60657
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424659256038336
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |