Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq51452 98.7 8e-16 seq50758 96.9 3e-15 seq32633 87.8 2e-12 >seq51452 Length=252770 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || |||||||||||||| || | | || | || ||||||||||| || Sbjct 59158 GTTGACTCCTTTTGAATATTGTAATCTGCGAGAGTATGCCCATCCTCGAGCTGTTTTCCT 59217 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | ||| |||||||| || || | ||| ||||| || ||| ||| ||| Sbjct 59218 GCGAAGATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTGGCTTTA 59277 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||||| |||||||| ||||||| | ||||| ||||| || Sbjct 59278 ACATTGTCGATCGTGTCTGAACTCTCAACTTCGAGAGTTACGGTCTTGCCAGTCAGGGTC 59337 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 59338 TTCACAAAGATCTGCAT 59354 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||||| || || | ||| | ||||| || || || ||||||||||| | Sbjct 57988 CCACCCCTCAACCTCAGCACAAGATGGAGAGTAGACTCCTTCTGGATATTGTAGTCCGCC 58047 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | || || | |||||| || || | ||||| | ||| || |||||||| Sbjct 58048 AGTGTCCTACCATCCTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGCGGA 58107 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| |||||||| ||||| |||| | || | ||||||| | |||||| Sbjct 58108 ATACCTTCTTTATCCTGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAACT 58167 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | || ||||| | ||||| |||||||||||||| Sbjct 58168 TCCAATGTGATGGTCTTTCCCGTTAAGGTTTTAACAAAGATTTGCAT 58214 >seq50758 Length=122349 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTC 27097 ||||| || | ||||| || || || || ||||||||| || ||| || ||||||| Sbjct 118016 ACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGC-CGTCTTC 117958 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||| || |||||| | || || | ||| || ||||| || | || || || || Sbjct 117957 GAGCTGCTTTCCGGCGAATATCAGCCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCCTG 117898 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| || | | | || | |||||| | | |||||| || || || || | ||| Sbjct 117897 AATCTTCGCCTTAACGTTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTTTT 117838 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||||||||||||| ||||| Sbjct 117837 ACCGGTTAGGGTTTTCACAAAGATCTGCAT 117808 >seq32633 Length=132462 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | |||||| | |||||||| | || || ||||| || || || || || Sbjct 60430 CCTCCCCTCAACCGGAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTATAATCAGCA 60489 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | || || ||||| ||||| || |||| | |||||| || ||||| || Sbjct 60490 AGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATTAAACGCTGCTGGTCCGGGGGA 60549 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| ||||| || |||||| ||||| | || | || |||| |||||| Sbjct 60550 ATACCTTCTTTGTCTTGGATCTTTGCTTTCACATTATCAATTGTATCTGAACTCTCAACT 60609 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | || || |||| || ||||||||||| |||||| Sbjct 60610 TCCAGCGTGATTGTCTTCCCAGTCAACGTCTTCACAAAGATCTGCATA 60657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424659256038336