Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq49814 111 2e-19 seq2125 111 2e-19 seq9544 98.7 1e-15 seq49945 96.9 4e-15 seq37818 95.1 2e-14 >seq49814 Length=37993 Score = 111 bits (122), Expect = 2e-19 Identities = 246/366 (67%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 |||||| | || || | ||| | || | |||||| || || | |||||| || || Sbjct 31938 ATCAAATCTTCCAGGTCTAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTAGCAGC 31997 Query 11512 AATAACCACAATGCCAGTCTCATT---GTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568 ||| || | | ||||| | || || ||| |||||||| |||||||| | ||| || Sbjct 31998 AATGACAATGACTCCAGTGT--TTCCAGTGAAA-CCATCCATTTCGGTGAGAAGTTGGTT 32054 Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCAC 11628 || ||| || ||||| ||||||||| | | ||||| | | |||| | || || Sbjct 32055 AAGTGTCTGCTCTCTTTCATCATTTCCACCACCAATACCAGTTCCTCTTTGCCTCCCAAC 32114 Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 11688 ||||||||||||||||| ||||| | ||| ||| ||||| || | | || | Sbjct 32115 AGCATCAATCTCATCAATAAAGACTAAACAAGGTGAATTTTGCTTTGCCTTGTTGAATAA 32174 Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCA 11748 || | ||| || || |||||||||||||||||||| | || | || ||||| Sbjct 32175 GTCCCTAACTCTAGAAGCTCCCACACCAACAAACATCTCAATGAACTCTGAACCAGAGAG 32234 Query 11749 CTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGT 11808 | |||||| || | || ||| || ||||| || || || | ||||| || || Sbjct 32235 AGAAAAGAATGGAACCTCTGCTTCCCCGGCGATCGCCTTAGCCAGCAATGTCTTCCCTGT 32294 Query 11809 ACCTGG 11814 ||||| Sbjct 32295 CCCTGG 32300 >seq2125 Length=154978 Score = 111 bits (122), Expect = 2e-19 Identities = 302/454 (67%), Gaps = 14/454 (3%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 |||||| || || || | ||| | || ||||| ||||| | ||||| || ||||| Sbjct 125589 ATCAAATCGCCCTGGTCTAAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 125648 Query 11512 AATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568 || ||| | || ||||| |||| || || || ||||| || || | || ||| || Sbjct 125649 AACAACTATTATACCAGT---ATTGCCTTCGAAACCGTCCATTTCTGTCAATAGTTGGTT 125705 Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCC 11626 | || ||||| || |||||||| || | | | | |||| | | |||| || Sbjct 125706 CAGGGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCA 125763 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || |||||||| ||||||| || ||||| || || |||||| ||| | | || Sbjct 125764 ACAGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA 125823 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 ||||| || || | ||| || ||||||||||||||||| ||||| | || | || Sbjct 125824 AGATCACGTACTCGAGAGGCTCCAACACCAACAAACATCTCAACAAATTCTGAACCTGA- 125882 Query 11747 CACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCC 11805 | || || ||||| ||| | |||||| || || || || || |||||||| || Sbjct 125883 AATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCC 125942 Query 11806 CGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGAT-CTTGGCACCACTTCCAAAAT 11864 ||||| || ||| | ||||| | ||| || || | | | |||| | || | Sbjct 125943 AGTACCCGGAGGACCAACAAGAAGAACACCTTTTGGAATACGAGCCCCCAC-TGCAGTAA 126001 Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 | |||||||| | ||| | ||| || || | ||| Sbjct 126002 ACCTCTCGGGCTTCTTCAAAAATTCTACGACCTC 126035 >seq9544 Length=262091 Score = 98.7 bits (108), Expect = 1e-15 Identities = 192/279 (69%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | | ||||||||| || || |||||||||||||| | Sbjct 111982 AAACCCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 111925 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| || |||| | ||| | ||||| ||||||||||||||||| || |||||| Sbjct 111924 CCTCCCATTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATA 111865 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || | ||| | || | || || | ||| | || || || || ||||| Sbjct 111864 CAAGG-CGCTTTCGACTTCGCCTTCTCGAACAAATCCCTCACTCTAGAAGCTCCTACACC 111806 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 ||||||| ||| ||||| | || || | || || ||||| ||| | |||||| Sbjct 111805 CACAAACAACTCAACAAACTCTGATGCCGCACATGAGAAAAATGGTACACCAGCTTCACC 111746 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || | |||| || | || |||||||| ||||| || Sbjct 111745 AGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 111707 >seq49945 Length=41976 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || |||||||| || ||||| || || | ||||| | ||| ||| ||||| | ||| Sbjct 17057 TGAGGTCTTGGAGTTCCAGCGTTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGA 17116 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | ||||||| | |||||| ||||| || ||| |||||| || | | Sbjct 17117 GACATCAAATGATATGTCTTGATGACAGATTCAATATCATCCTTGTGGATCCCAACAGAT 17176 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119 || | ||| | ||||| ||||| |||| | | | || | || | || | || || Sbjct 17177 ACTCTCATCAGCATGTGTTGTGGCCTTTCTACAACTTTACCCT-GAATCTTTAAGAGGTA 17235 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164 | ||||||||||||||| |||||||||| || ||||| |||| Sbjct 17236 AGACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAATCAAAGTC 17280 >seq37818 Length=88620 Score = 95.1 bits (104), Expect = 2e-14 Identities = 267/403 (66%), Gaps = 8/403 (2%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || | | |||||||| || || ||||||||||||||| | | Sbjct 62138 AACCCATCCATTTCTGTCAACAGCTGATTAATCGTCTGCTCTCTCTCATCATTTCCA--C 62081 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | | | || || | | |||| | || || ||||||||||||||||| || ||||||| Sbjct 62080 CTCCAAGTCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACAATAC 62021 Query 11658 ATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 | || | ||| | || | ||||| | ||| | || || || |||||||| Sbjct 62020 AAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCACACCG 61962 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 ||||||| ||| ||||| | || || | || || ||||| ||| || ||||| Sbjct 61961 ACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCTCACCA 61902 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836 || | |||| || | || ||||| || ||||| || ||| | | ||| ||| Sbjct 61901 GCTACTGCTCTTGCCAAAAGTGTCTTACCAGTACCAGGTGGTCCCACTAAAAGACACCCT 61842 Query 11837 CGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATC 11896 || ||||| ||||| || |||| | || || | || | ||||| |||| Sbjct 61841 TTTGGTATCTTAGCACCTAAAGCAGTATATTTATCAGGATTTTTCAAGAAATCAACAACT 61782 Query 11897 TCTT-CAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 |||| ||| | || | |||||| ||| || |||||||| Sbjct 61781 TCTTGCAACTCCAAC-TTGGCCTGATCAGCACCAGCAACATCA 61740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627614923948800