Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq49814 111 2e-19
seq2125 111 2e-19
seq9544 98.7 1e-15
seq49945 96.9 4e-15
seq37818 95.1 2e-14
>seq49814
Length=37993
Score = 111 bits (122), Expect = 2e-19
Identities = 246/366 (67%), Gaps = 6/366 (2%)
Strand=Plus/Plus
Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511
|||||| | || || | ||| | || | |||||| || || | |||||| || ||
Sbjct 31938 ATCAAATCTTCCAGGTCTAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTAGCAGC 31997
Query 11512 AATAACCACAATGCCAGTCTCATT---GTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568
||| || | | ||||| | || || ||| |||||||| |||||||| | ||| ||
Sbjct 31998 AATGACAATGACTCCAGTGT--TTCCAGTGAAA-CCATCCATTTCGGTGAGAAGTTGGTT 32054
Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCAC 11628
|| ||| || ||||| ||||||||| | | ||||| | | |||| | || ||
Sbjct 32055 AAGTGTCTGCTCTCTTTCATCATTTCCACCACCAATACCAGTTCCTCTTTGCCTCCCAAC 32114
Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 11688
||||||||||||||||| ||||| | ||| ||| ||||| || | | || |
Sbjct 32115 AGCATCAATCTCATCAATAAAGACTAAACAAGGTGAATTTTGCTTTGCCTTGTTGAATAA 32174
Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCA 11748
|| | ||| || || |||||||||||||||||||| | || | || |||||
Sbjct 32175 GTCCCTAACTCTAGAAGCTCCCACACCAACAAACATCTCAATGAACTCTGAACCAGAGAG 32234
Query 11749 CTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGT 11808
| |||||| || | || ||| || ||||| || || || | ||||| || ||
Sbjct 32235 AGAAAAGAATGGAACCTCTGCTTCCCCGGCGATCGCCTTAGCCAGCAATGTCTTCCCTGT 32294
Query 11809 ACCTGG 11814
|||||
Sbjct 32295 CCCTGG 32300
>seq2125
Length=154978
Score = 111 bits (122), Expect = 2e-19
Identities = 302/454 (67%), Gaps = 14/454 (3%)
Strand=Plus/Plus
Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511
|||||| || || || | ||| | || ||||| ||||| | ||||| || |||||
Sbjct 125589 ATCAAATCGCCCTGGTCTAAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 125648
Query 11512 AATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568
|| ||| | || ||||| |||| || || || ||||| || || | || ||| ||
Sbjct 125649 AACAACTATTATACCAGT---ATTGCCTTCGAAACCGTCCATTTCTGTCAATAGTTGGTT 125705
Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCC 11626
| || ||||| || |||||||| || | | | | |||| | | |||| ||
Sbjct 125706 CAGGGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCA 125763
Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686
|| |||||||| ||||||| || ||||| || || |||||| ||| | | ||
Sbjct 125764 ACAGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA 125823
Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746
||||| || || | ||| || ||||||||||||||||| ||||| | || | ||
Sbjct 125824 AGATCACGTACTCGAGAGGCTCCAACACCAACAAACATCTCAACAAATTCTGAACCTGA- 125882
Query 11747 CACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCC 11805
| || || ||||| ||| | |||||| || || || || || |||||||| ||
Sbjct 125883 AATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCC 125942
Query 11806 CGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGAT-CTTGGCACCACTTCCAAAAT 11864
||||| || ||| | ||||| | ||| || || | | | |||| | || |
Sbjct 125943 AGTACCCGGAGGACCAACAAGAAGAACACCTTTTGGAATACGAGCCCCCAC-TGCAGTAA 126001
Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898
| |||||||| | ||| | ||| || || | |||
Sbjct 126002 ACCTCTCGGGCTTCTTCAAAAATTCTACGACCTC 126035
>seq9544
Length=262091
Score = 98.7 bits (108), Expect = 1e-15
Identities = 192/279 (69%), Gaps = 6/279 (2%)
Strand=Plus/Minus
Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598
||| |||||||| || || | | ||||||||| || || |||||||||||||| |
Sbjct 111982 AAACCCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 111925
Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656
| | ||| || |||| | ||| | ||||| ||||||||||||||||| || ||||||
Sbjct 111924 CCTCCCATTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATA 111865
Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715
|| || | ||| | || | || || | ||| | || || || || |||||
Sbjct 111864 CAAGG-CGCTTTCGACTTCGCCTTCTCGAACAAATCCCTCACTCTAGAAGCTCCTACACC 111806
Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775
||||||| ||| ||||| | || || | || || ||||| ||| | ||||||
Sbjct 111805 CACAAACAACTCAACAAACTCTGATGCCGCACATGAGAAAAATGGTACACCAGCTTCACC 111746
Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814
|| | |||| || | || |||||||| ||||| ||
Sbjct 111745 AGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 111707
>seq49945
Length=41976
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/225 (70%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000
|| |||||||| || ||||| || || | ||||| | ||| ||| ||||| | |||
Sbjct 17057 TGAGGTCTTGGAGTTCCAGCGTTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGA 17116
Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060
|||||| | ||||||| | |||||| ||||| || ||| |||||| || | |
Sbjct 17117 GACATCAAATGATATGTCTTGATGACAGATTCAATATCATCCTTGTGGATCCCAACAGAT 17176
Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119
|| | ||| | ||||| ||||| |||| | | | || | || | || | || ||
Sbjct 17177 ACTCTCATCAGCATGTGTTGTGGCCTTTCTACAACTTTACCCT-GAATCTTTAAGAGGTA 17235
Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164
| ||||||||||||||| |||||||||| || ||||| ||||
Sbjct 17236 AGACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAATCAAAGTC 17280
>seq37818
Length=88620
Score = 95.1 bits (104), Expect = 2e-14
Identities = 267/403 (66%), Gaps = 8/403 (2%)
Strand=Plus/Minus
Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599
|| |||||||| || || | | |||||||| || || ||||||||||||||| | |
Sbjct 62138 AACCCATCCATTTCTGTCAACAGCTGATTAATCGTCTGCTCTCTCTCATCATTTCCA--C 62081
Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657
| | | || || | | |||| | || || ||||||||||||||||| || |||||||
Sbjct 62080 CTCCAAGTCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACAATAC 62021
Query 11658 ATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716
| || | ||| | || | ||||| | ||| | || || || ||||||||
Sbjct 62020 AAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCACACCG 61962
Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776
||||||| ||| ||||| | || || | || || ||||| ||| || |||||
Sbjct 61961 ACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCTCACCA 61902
Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836
|| | |||| || | || ||||| || ||||| || ||| | | ||| |||
Sbjct 61901 GCTACTGCTCTTGCCAAAAGTGTCTTACCAGTACCAGGTGGTCCCACTAAAAGACACCCT 61842
Query 11837 CGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATC 11896
|| ||||| ||||| || |||| | || || | || | ||||| ||||
Sbjct 61841 TTTGGTATCTTAGCACCTAAAGCAGTATATTTATCAGGATTTTTCAAGAAATCAACAACT 61782
Query 11897 TCTT-CAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938
|||| ||| | || | |||||| ||| || ||||||||
Sbjct 61781 TCTTGCAACTCCAAC-TTGGCCTGATCAGCACCAGCAACATCA 61740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627614923948800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |