Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq9544 96.9 4e-15
seq50431 87.8 2e-12
seq2125 84.2 3e-11
>seq9544
Length=262091
Score = 96.9 bits (106), Expect = 4e-15
Identities = 192/280 (69%), Gaps = 6/280 (2%)
Strand=Plus/Minus
Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211
||| |||||||| ||||||||||||||||| || || || || | ||||||||| ||
Sbjct 111982 AAACCCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 111925
Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269
| | ||| || |||| | ||| | || || || ||||| ||||| || || || |||
Sbjct 111924 CCTCCCATTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATA 111865
Query 14270 CATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328
|| || | ||| || || || || | ||| | |||||| || || |||||
Sbjct 111864 CAAGG-CGCTTTCGACTTCGCCTTCTCGAACAAATCCCTCACTCTAGAAGCTCCTACACC 111806
Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388
|||||||| ||| ||||| | | || | |||| || || || || || ||||||
Sbjct 111805 CACAAACAACTCAACAAACTCTGATGCCGCACATGAGAAAAATGGTACACCAGCTTCACC 111746
Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428
|| | |||| || | || ||||| || || || |||
Sbjct 111745 AGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGGT 111706
>seq50431
Length=77561
Score = 87.8 bits (96), Expect = 2e-12
Identities = 118/162 (73%), Gaps = 8/162 (5%)
Strand=Plus/Minus
Query 33009 CACTTTGCCGCACAAAGTCATGTGGACAATTCATTTTTAAGTCCACTTGGTTTCACATTA 33068
|| ||||| ||||| | ||||||||| ||||||||| || | || ||| |||||| |
Sbjct 61998 CATTTTGCAGCACAGACTCATGTGGATAATTCATTTGGAAATTCATTTGAGTTCACAATC 61939
Query 33069 GATAATACATATGGAACACACGCACTTGTTGAAATGTGTA----GAAGGCATATACCAAA 33124
|||| | ||||| ||||| | |||| ||||| |||| || || || ||||
Sbjct 61938 AATAACATTTATGGTACACATGTACTTCTTGAAGCTTGTAAGTTGACTAAATCTATCAAA 61879
Query 33125 TGTAGAGTTCATACATTTTAGTACGGATGAAGTATACGGCGA 33166
||| ||||| ||| |||||||||||||||| || || ||
Sbjct 61878 ---AGA-TTCATTCATGTTAGTACGGATGAAGTTTATGGTGA 61841
>seq2125
Length=154978
Score = 84.2 bits (92), Expect = 3e-11
Identities = 243/367 (66%), Gaps = 8/367 (2%)
Strand=Plus/Plus
Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124
|||||| || ||||| | || | || |||||| ||||| || || || |||||
Sbjct 125589 ATCAAATCGCCCTGGTCTAAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 125648
Query 14125 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 14184
| || | || || || | | || || || ||||| || ||||| ||||| || |
Sbjct 125649 AACAACTATTATACCAGTATTGCCTTCGAAACCGTCCATTTCTGTCAATAGTTGGTTCAG 125708
Query 14185 GGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTACCGACG 14242
||| ||||| | |||||||||| | | | | | || | | | |||| || ||
Sbjct 125709 GGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAACA 125766
Query 14243 GCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTT-CACGGGCAACTTCAAAGAT 14301
|| ||||||||||| | || || || || || ||||| | || | ||| ||| |
Sbjct 125767 GCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA-AG 125825
Query 14302 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACA 14361
||| || |||| ||| || ||||| ||||||||||| ||||| | | | ||| |
Sbjct 125826 ATCACGTACTCGAGAGGCTCCAACACCAACAAACATCTCAACAAATTCTGAACCTGAA-A 125884
Query 14362 TTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 14420
||| || || || || | |||||| || || || || || ||||||||||| |
Sbjct 125885 TTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCCAG 125944
Query 14421 TCCCTGG 14427
| || ||
Sbjct 125945 TACCCGG 125951
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618024497183680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |