Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq9544 96.9 4e-15 seq50431 87.8 2e-12 seq2125 84.2 3e-11 >seq9544 Length=262091 Score = 96.9 bits (106), Expect = 4e-15 Identities = 192/280 (69%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| |||||||| ||||||||||||||||| || || || || | ||||||||| || Sbjct 111982 AAACCCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 111925 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | ||| || |||| | ||| | || || || ||||| ||||| || || || ||| Sbjct 111924 CCTCCCATTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATA 111865 Query 14270 CATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || | ||| || || || || | ||| | |||||| || || ||||| Sbjct 111864 CAAGG-CGCTTTCGACTTCGCCTTCTCGAACAAATCCCTCACTCTAGAAGCTCCTACACC 111806 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 |||||||| ||| ||||| | | || | |||| || || || || || |||||| Sbjct 111805 CACAAACAACTCAACAAACTCTGATGCCGCACATGAGAAAAATGGTACACCAGCTTCACC 111746 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 || | |||| || | || ||||| || || || ||| Sbjct 111745 AGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGGT 111706 >seq50431 Length=77561 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/162 (73%), Gaps = 8/162 (5%) Strand=Plus/Minus Query 33009 CACTTTGCCGCACAAAGTCATGTGGACAATTCATTTTTAAGTCCACTTGGTTTCACATTA 33068 || ||||| ||||| | ||||||||| ||||||||| || | || ||| |||||| | Sbjct 61998 CATTTTGCAGCACAGACTCATGTGGATAATTCATTTGGAAATTCATTTGAGTTCACAATC 61939 Query 33069 GATAATACATATGGAACACACGCACTTGTTGAAATGTGTA----GAAGGCATATACCAAA 33124 |||| | ||||| ||||| | |||| ||||| |||| || || || |||| Sbjct 61938 AATAACATTTATGGTACACATGTACTTCTTGAAGCTTGTAAGTTGACTAAATCTATCAAA 61879 Query 33125 TGTAGAGTTCATACATTTTAGTACGGATGAAGTATACGGCGA 33166 ||| ||||| ||| |||||||||||||||| || || || Sbjct 61878 ---AGA-TTCATTCATGTTAGTACGGATGAAGTTTATGGTGA 61841 >seq2125 Length=154978 Score = 84.2 bits (92), Expect = 3e-11 Identities = 243/367 (66%), Gaps = 8/367 (2%) Strand=Plus/Plus Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 |||||| || ||||| | || | || |||||| ||||| || || || ||||| Sbjct 125589 ATCAAATCGCCCTGGTCTAAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 125648 Query 14125 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 14184 | || | || || || | | || || || ||||| || ||||| ||||| || | Sbjct 125649 AACAACTATTATACCAGTATTGCCTTCGAAACCGTCCATTTCTGTCAATAGTTGGTTCAG 125708 Query 14185 GGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTACCGACG 14242 ||| ||||| | |||||||||| | | | | | || | | | |||| || || Sbjct 125709 GGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAACA 125766 Query 14243 GCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTT-CACGGGCAACTTCAAAGAT 14301 || ||||||||||| | || || || || || ||||| | || | ||| ||| | Sbjct 125767 GCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA-AG 125825 Query 14302 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACA 14361 ||| || |||| ||| || ||||| ||||||||||| ||||| | | | ||| | Sbjct 125826 ATCACGTACTCGAGAGGCTCCAACACCAACAAACATCTCAACAAATTCTGAACCTGAA-A 125884 Query 14362 TTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 14420 ||| || || || || | |||||| || || || || || ||||||||||| | Sbjct 125885 TTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCCAG 125944 Query 14421 TCCCTGG 14427 | || || Sbjct 125945 TACCCGG 125951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618024497183680