Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq2125 141 1e-28
seq9544 118 1e-21
seq37818 102 1e-16
seq49945 82.4 9e-11
>seq2125
Length=154978
Score = 141 bits (156), Expect = 1e-28
Identities = 274/397 (69%), Gaps = 8/397 (2%)
Strand=Plus/Plus
Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585
|||||| || ||||| | ||| | || ||||| ||||| | ||||| || || ||
Sbjct 125589 ATCAAATCGCCCTGGTCTAAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 125648
Query 9586 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645
| || | ||||| || | || ||||| ||||| |||||||| |||||||| |
Sbjct 125649 AACAACTATTATACCAGTATTGCCTTCGAAACCGTCCATTTCTGTCAATAGTTGGTTCAG 125708
Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACG 9703
|| ||||||| |||||||||| || | | | | |||| | | |||| || ||
Sbjct 125709 GGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAACA 125766
Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA-CTTCAAAGAG 9762
|||||||| ||||||| || || ||||| || |||||| || ||| ||| ||
Sbjct 125767 GCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA-AG 125825
Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9822
||| ||||| || ||| || ||||||||||||||||| ||||| | || | ||| |
Sbjct 125826 ATCACGTACTCGAGAGGCTCCAACACCAACAAACATCTCAACAAATTCTGAACCTGAA-A 125884
Query 9823 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881
||| || || || ||| | |||||| ||||| || || || || ||||| || |
Sbjct 125885 TTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCCAG 125944
Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 9918
|||| || ||| | || || ||||| ||||||
Sbjct 125945 TACCCGGAGGACCAACAAGAAGAACACCTTTTGGAAT 125981
>seq9544
Length=262091
Score = 118 bits (130), Expect = 1e-21
Identities = 199/282 (71%), Gaps = 12/282 (4%)
Strand=Plus/Minus
Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672
||| |||||||| || ||||| ||||| |||||||| || || | ||||||||| |
Sbjct 111982 AAACCCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 111925
Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730
| | ||| || |||| | ||| ||||||| ||||||||||||||||| || || ||
Sbjct 111924 CCTCCCATTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATA 111865
Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786
|| || ||||| || || || || | ||||| ||| || | || || ||
Sbjct 111864 CAAGG--CGCTTTCGACTTCGCCTTCTCGAACAAATCCC--TCACTCTAGAAGCTCCTAC 111809
Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846
||| ||||||| ||| ||||| | || || | |||| || || || ||| || |||
Sbjct 111808 ACCCACAAACAACTCAACAAACTCTGATGCCGCACATGAGAAAAATGGTACACCAGCTTC 111749
Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
||| |||| |||| || | ||| ||||| || ||||| ||
Sbjct 111748 ACCAGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 111707
>seq37818
Length=88620
Score = 102 bits (112), Expect = 1e-16
Identities = 248/372 (67%), Gaps = 8/372 (2%)
Strand=Plus/Minus
Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673
|| |||||||| |||||||| || || ||||| || || || | |||||||| | |
Sbjct 62138 AACCCATCCATTTCTGTCAACAGCTGATTAATCGTCTGCTCTCTCTCATCATTTCCA--C 62081
Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731
| | | || || | | |||| |||| || ||||||||||||||||| || || || |
Sbjct 62080 CTCCAAGTCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACAATAC 62021
Query 9732 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789
| || ||||| || || ||||| | ||||| ||| | || ||||||||
Sbjct 62020 AAGG--CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCACACC 61963
Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849
||||||| ||| ||||| | || || | |||| || || || ||| | |||||
Sbjct 61962 GACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCTCACC 61903
Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909
|| | |||| || | ||| |||||||| ||||| || ||| | | || ||
Sbjct 61902 AGCTACTGCTCTTGCCAAAAGTGTCTTACCAGTACCAGGTGGTCCCACTAAAAGACACCC 61843
Query 9910 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 9969
| ||| ||||| || || || ||| | ||||| | || | ||||| ||||
Sbjct 61842 TTTTGGTATCTTAGCACCTAAAGCAGTATATTTATCAGGATTTTTCAAGAAATCAACAAC 61783
Query 9970 TTCTTCCAATTC 9981
||||| ||| ||
Sbjct 61782 TTCTTGCAACTC 61771
>seq49945
Length=41976
Score = 82.4 bits (90), Expect = 9e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 104196
||||||| || | || ||| |||||| ||||||||||||||| | || || | || |
Sbjct 17283 AGAGACTTTGATTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCTTACCTCTTAAAG 17224
Query 104197 GCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256
|| | ||| | | |||| ||||| ||||| | ||| | || | | || ||
Sbjct 17223 ATTC-AGGGTAAAGTTGTAGAAAGGCCACAACACATGCTGATGAGAGTATCTGTTGGGAT 17165
Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 104316
|| ||| || ||||| |||||| | ||||||| | |||||| ||| | |||
Sbjct 17164 CCACAAGGATGATATTGAATCTGTCATCAAGACATATCATTTGATGTCTCAACGATGGTT 17105
Query 104317 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365
|| ||| ||| | ||||| | || || ||||| || |||||||| |||
Sbjct 17104 CACTCATGCATCTCCAACATTATTTAACGCTGGAACTCCAAGACCTCAA 17056
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582873456502720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |