Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2125 141 1e-28 seq9544 118 1e-21 seq37818 102 1e-16 seq49945 82.4 9e-11 >seq2125 Length=154978 Score = 141 bits (156), Expect = 1e-28 Identities = 274/397 (69%), Gaps = 8/397 (2%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || ||||| | ||| | || ||||| ||||| | ||||| || || || Sbjct 125589 ATCAAATCGCCCTGGTCTAAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 125648 Query 9586 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645 | || | ||||| || | || ||||| ||||| |||||||| |||||||| | Sbjct 125649 AACAACTATTATACCAGTATTGCCTTCGAAACCGTCCATTTCTGTCAATAGTTGGTTCAG 125708 Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACG 9703 || ||||||| |||||||||| || | | | | |||| | | |||| || || Sbjct 125709 GGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAACA 125766 Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA-CTTCAAAGAG 9762 |||||||| ||||||| || || ||||| || |||||| || ||| ||| || Sbjct 125767 GCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA-AG 125825 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9822 ||| ||||| || ||| || ||||||||||||||||| ||||| | || | ||| | Sbjct 125826 ATCACGTACTCGAGAGGCTCCAACACCAACAAACATCTCAACAAATTCTGAACCTGAA-A 125884 Query 9823 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 ||| || || || ||| | |||||| ||||| || || || || ||||| || | Sbjct 125885 TTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCCAG 125944 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 9918 |||| || ||| | || || ||||| |||||| Sbjct 125945 TACCCGGAGGACCAACAAGAAGAACACCTTTTGGAAT 125981 >seq9544 Length=262091 Score = 118 bits (130), Expect = 1e-21 Identities = 199/282 (71%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| |||||||| || ||||| ||||| |||||||| || || | ||||||||| | Sbjct 111982 AAACCCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 111925 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| || |||| | ||| ||||||| ||||||||||||||||| || || || Sbjct 111924 CCTCCCATTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATA 111865 Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || || ||||| || || || || | ||||| ||| || | || || || Sbjct 111864 CAAGG--CGCTTTCGACTTCGCCTTCTCGAACAAATCCC--TCACTCTAGAAGCTCCTAC 111809 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 ||| ||||||| ||| ||||| | || || | |||| || || || ||| || ||| Sbjct 111808 ACCCACAAACAACTCAACAAACTCTGATGCCGCACATGAGAAAAATGGTACACCAGCTTC 111749 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||| |||| |||| || | ||| ||||| || ||||| || Sbjct 111748 ACCAGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 111707 >seq37818 Length=88620 Score = 102 bits (112), Expect = 1e-16 Identities = 248/372 (67%), Gaps = 8/372 (2%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| |||||||| || || ||||| || || || | |||||||| | | Sbjct 62138 AACCCATCCATTTCTGTCAACAGCTGATTAATCGTCTGCTCTCTCTCATCATTTCCA--C 62081 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | | || || | | |||| |||| || ||||||||||||||||| || || || | Sbjct 62080 CTCCAAGTCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACAATAC 62021 Query 9732 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 | || ||||| || || ||||| | ||||| ||| | || |||||||| Sbjct 62020 AAGG--CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCACACC 61963 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 ||||||| ||| ||||| | || || | |||| || || || ||| | ||||| Sbjct 61962 GACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCTCACC 61903 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 || | |||| || | ||| |||||||| ||||| || ||| | | || || Sbjct 61902 AGCTACTGCTCTTGCCAAAAGTGTCTTACCAGTACCAGGTGGTCCCACTAAAAGACACCC 61843 Query 9910 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 9969 | ||| ||||| || || || ||| | ||||| | || | ||||| |||| Sbjct 61842 TTTTGGTATCTTAGCACCTAAAGCAGTATATTTATCAGGATTTTTCAAGAAATCAACAAC 61783 Query 9970 TTCTTCCAATTC 9981 ||||| ||| || Sbjct 61782 TTCTTGCAACTC 61771 >seq49945 Length=41976 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 104196 ||||||| || | || ||| |||||| ||||||||||||||| | || || | || | Sbjct 17283 AGAGACTTTGATTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCTTACCTCTTAAAG 17224 Query 104197 GCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 || | ||| | | |||| ||||| ||||| | ||| | || | | || || Sbjct 17223 ATTC-AGGGTAAAGTTGTAGAAAGGCCACAACACATGCTGATGAGAGTATCTGTTGGGAT 17165 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 104316 || ||| || ||||| |||||| | ||||||| | |||||| ||| | ||| Sbjct 17164 CCACAAGGATGATATTGAATCTGTCATCAAGACATATCATTTGATGTCTCAACGATGGTT 17105 Query 104317 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 || ||| ||| | ||||| | || || ||||| || |||||||| ||| Sbjct 17104 CACTCATGCATCTCCAACATTATTTAACGCTGGAACTCCAAGACCTCAA 17056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582873456502720