Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_028834.1 Length=48216 Score E Sequences producing significant alignments: (Bits) Value seq23686 82.4 2e-11 seq1522 82.4 2e-11 >seq23686 Length=88819 Score = 82.4 bits (90), Expect = 2e-11 Identities = 56/62 (90%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 36281 TAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTG-CCAGACTGCGCTAC 36339 ||||||||||||||| | ||||||| |||||| ||||||||||| |||||||||||||| Sbjct 24787 TAGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTAC 24728 Query 36340 AC 36341 || Sbjct 24727 AC 24726 >seq1522 Length=15000 Score = 82.4 bits (90), Expect = 2e-11 Identities = 56/62 (90%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 36281 TAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTG-CCAGACTGCGCTAC 36339 ||||||||||||||| | ||||||| |||||| ||||||||||| |||||||||||||| Sbjct 2129 TAGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTAC 2070 Query 36340 AC 36341 || Sbjct 2069 AC 2068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154072335170208