Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq48584 82.4 2e-11 seq42945 82.4 2e-11 seq27213 82.4 2e-11 seq27093 82.4 2e-11 seq20433 82.4 2e-11 seq11951 82.4 2e-11 seq10034 82.4 2e-11 seq4863 82.4 2e-11 seq35516 80.6 9e-11 >seq48584 Length=83616 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 55908 CGGGGTAGAGCAGGTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 55849 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 55848 CTGTCTCCGCAAC 55836 >seq42945 Length=83106 Score = 82.4 bits (90), Expect = 2e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 21148 GTCGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAA 21207 || || ||||||||| |||||||||| ||||||||||| |||||| | ||||| || Sbjct 14742 GTTGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAA 14801 Query 21208 TCCTGTCTCCGCAAC 21222 ||||||||||||||| Sbjct 14802 TCCTGTCTCCGCAAC 14816 >seq27213 Length=897 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 636 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 695 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 696 CTGTCTCCGCAAC 708 >seq27093 Length=236599 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 231900 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 231841 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 231840 CTGTCTCCGCAAC 231828 >seq20433 Length=1215 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 621 CGGGGTAGAGCAGGTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 680 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 681 CTGTCTCCGCAAC 693 >seq11951 Length=219413 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 40806 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 40747 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 40746 CTGTCTCCGCAAC 40734 >seq10034 Length=2804 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 2699 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 2640 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 2639 CTGTCTCCGCAAC 2627 >seq4863 Length=7020 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 797 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 738 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 737 CTGTCTCCGCAAC 725 >seq35516 Length=62621 Score = 80.6 bits (88), Expect = 9e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 21151 GGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATCC 21210 || ||||||||| |||||||||| ||||||||||| |||||| | ||||| ||||| Sbjct 12782 GGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATCC 12841 Query 21211 TGTCTCCGCAAC 21222 |||||||||||| Sbjct 12842 TGTCTCCGCAAC 12853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162422263916304