Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq50758 98.7 7e-16 seq32633 93.3 3e-14 seq20296 91.5 1e-13 seq51452 89.7 4e-13 >seq50758 Length=122349 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| ||||||||||| ||| | ||||||||| || || | || || |||||| | Sbjct 118263 AATGCAGATTTTTGTGAAGACTTTGACTGGGAAAACCATCACTTTGGAGGTGGAAAGCTC 118322 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| || |||| ||||| || || ||||| || ||| |||| || Sbjct 118323 CGACACAATTGACAAC--GTCAAGGCTAAGATTCAGGACAAGGAGGGTATTCCACCAGAC 118380 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| || | || ||||||||||| ||| | || |||| || | | | | |||||| Sbjct 118381 CAGCAAAGGCTGATCTTTGCCGGAAAGCAACTTGAAGACGGCCGAACCCTCGCTGATTAC 118440 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| || | || |||||| | ||| | || ||||| Sbjct 118441 AACATCCAGAAGGAGTCTACCCTTCACTTGGTTCTCCGTCTTCGCGGCGG 118490 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| || || |||||| || || |||| ||||||||| || Sbjct 118036 ATGCAAATCTTTGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 118095 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || |||| || | | | || | | || || ||||| || | || || Sbjct 118096 GACACAATTGACAA-CGTTAAGGCGAAGATTCAG--GATAAAGAGGGAATCCCACCAGAT 118152 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| || ||||| || ||||| ||||| || | || | | | | |||||| Sbjct 118153 CAGCAGAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGTACCCTAGCTGATTAC 118212 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || || ||| ||| | || ||||| | ||| | ||||| || Sbjct 118213 AACATTCAGAAGGAGTCGACTCTTCACTTGGTGCTCCGTCTTCGTGGTGG 118262 >seq32633 Length=132462 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| |||||| | |||||||| ||| || | || || || ||| | Sbjct 61340 ATGCAGATCTTTGTAAAAACTTTAACTGGGAAGACTATCACTCTCGAGGTTGAGAGCTCA 61281 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || || ||| || ||||| |||||| |||| ||| | Sbjct 61280 GACACAATTGATAAT--GTTAAGGCAAAGATTCAGGACAAGGAAGGTATTCCTCCGGATC 61223 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| || ||||| ||||| ||| | || || | || | | | | || |||| Sbjct 61222 AGCAAAGGTTGATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACCCTTGCTGACTACA 61163 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| ||| | || | ||| | ||||||||||| || Sbjct 61162 ACATCCAAAAGGAGTCCACCCTCCACCTTGTTCTCCGTTTGCGTGGTGG 61114 >seq20296 Length=523354 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 10/235 (4%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || |||||||| || || || || || || |||| |||||| | Sbjct 452738 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTTGAGGTCGAATCC 452797 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 ||||| ||||||| || || ||| || ||||| ||||| |||| Sbjct 452798 TCCGAC-----ACAATCGACAACGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCAC 452852 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 ||| ||||| ||| | ||||| ||||||||||| |||| || | || | | | | | Sbjct 452853 CGGACCAGCAGCGGCTCATTTTCGCCGGAAAACAGCTGGAGGATGGCCGAACCCTAGCTG 452912 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| || || |||| | |||||||| | ||| | ||||| || Sbjct 452913 ATTACAACATCCAGAAGGAATCCACTCTCCATTTGGTGCTTCGTCTCCGTGGTGG 452967 >seq51452 Length=252770 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| ||||| | ||||||||| || ||| | || ||||||||| | Sbjct 4750 AATGCAAATTTTTGTTAAAACCTTGACTGGGAAAACAATCACATTGGAAGTCGAAAGCTC 4691 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||||| | ||| || || ||||| || || |||||| ||||| || Sbjct 4690 GGACACGATTGATAAT--GTTAAGGCCAAAATCCAAGATAAGGAAGGTATTCCGCCAGAT 4633 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| || || ||||| |||||||| | || || | ||| | | | |||||| Sbjct 4632 CAACAACGTTTGATCTTTGCAGGAAAACAGCTCGAGGATGGACGGACTCTCGCTGATTAC 4573 Query 27967 AACATCCAAAAAGAG 27981 || || ||||| ||| Sbjct 4572 AATATTCAAAAGGAG 4558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355631979985656