Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq19192 111 1e-19 seq32633 107 2e-18 seq17618 87.8 2e-12 seq20296 86.0 5e-12 seq51452 82.4 7e-11 seq17035 82.4 7e-11 seq7668 82.4 7e-11 >seq19192 Length=430667 Score = 111 bits (122), Expect = 1e-19 Identities = 171/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || ||||| || || || ||||||| ||| || || ||| || ||||| Sbjct 373393 AAATATCTGCATACCTCCCCTCAAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTAT 373452 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 |||||||| |||||||| | | | || ||||| || || || |||||||| || ||||| Sbjct 373453 GTTATAATCAGCAAGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAGTCGCTG 373512 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC 39224 |||||| | ||| | | || ||||| ||||| || | | | | || || Sbjct 373513 CTGGTCTGGGGGAATCCCTTCCTTGTCTTGAATTTTGGCCTTCACATTATCAATTGTGTC 373572 Query 39225 GCTCGA---CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTG 39281 ||| ||| || |||| |||||| ||||||| |||| || || ||||||||||| Sbjct 373573 ---CGAACTCTCAACCTCCAAGGTGATAGTTTTTCCTGTCAAAGTCTTGACAAAGATTTG 373629 Query 39282 CAT 39284 ||| Sbjct 373630 CAT 373632 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/236 (69%), Gaps = 10/236 (4%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | ||||||||| || || || || || ||||| ||||| Sbjct 373630 CATGCCTCCCCTGAGACGAAGCACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATC 373689 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| || | | | || ||||| ||||| || |||||||| | | ||||||||| | Sbjct 373690 TGCAAGGGTCCTTCCATCCTCAAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGG 373749 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTT--CTGTTTGAGCGTCGCCACCGTATC---GCTC 39228 || | | ||| |||||| ||| || | || | |||| | ||||| |||| Sbjct 373750 AGGAATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTGTCG--ATGGTATCTGAGCTC 373807 Query 39229 GACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || | ||||| | || ||||| | ||||||||||| || ||||| Sbjct 373808 ---TCAACTTCAAGGGTGATCGTCTTGCCCGTTAAAGTTTTAACAAAAATCTGCAT 373860 >seq32633 Length=132462 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || || || | ||||||||| || ||| |||||| || || |||||||| ||| Sbjct 60430 CCTCCCCTCAACCGGAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTATAATCAGCA 60489 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || | | || |||||||| || || ||||| || | |||||||||||| | ||| Sbjct 60490 AGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATTAAACGCTGCTGGTCCGGGGGA 60549 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||||| ||| || ||| | | | | ||||| ||| || Sbjct 60550 ATACCTTCTTTGTCTTGGATCTTTGCTTTCACATTATCAATTGTATCTGAACTCTCAACT 60609 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| |||||| | || || |||| ||| || |||||||| ||||| Sbjct 60610 TCCAGCGTGATTGTCTTCCCAGTCAACGTCTTCACAAAGATCTGCAT 60656 >seq17618 Length=194525 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || || ||| || || || || |||||||| || ||||| |||| || Sbjct 71835 CACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTC 71894 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| || || || || || ||||||||||| || | ||| | | || ||||| Sbjct 71895 AAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTGTCTTG 71954 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||| | | | | || ||| || || || || | ||||| |||| Sbjct 71955 GATCTTGGCTTTCACATTGTCGATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGTTTT 72014 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||| || ||||| || ||||| |||||||| Sbjct 72015 ACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 72047 >seq20296 Length=523354 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| || || || || || ||||| || || ||||| | || || Sbjct 452950 CACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGGCCATCCTC 452891 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || || || || || ||||||||||| | || | || || |||||| Sbjct 452890 CAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTG 452831 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || || | ||| | | | || ||| || || || || | ||||| | | Sbjct 452830 GATCTT-TGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCT 452772 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | ||||| || ||||| || ||||| |||||||| Sbjct 452771 TACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 452738 >seq51452 Length=252770 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || || ||| || || ||||| ||||| |||||||| | | || || Sbjct 3856 CACAAGATGGAGAGTAGACTCCTTCTGAATATTGTAATCAGCAAGTGTCCTACCATCCTC 3915 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | ||| || || ||||| ||||| | ||||||||| | || | || ||| || ||| | Sbjct 3916 CAACTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATGCCCTCCTTATCC-T 3974 Query 39195 GATTTTCTGTTTGAGCGTCGCCAC-CGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 || | | || | | | | || ||| || |||| || || || | ||||| Sbjct 3975 GAATCTTTGCCTTCACATTGTCAATCGTGTCTGAGCTC---TCAACTTCTAATGTGATGG 4031 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||||||| | |||||||||||||||||||| Sbjct 4032 TTTTTCCCGTTAAGGTTTTAACAAAGATTTGCAT 4065 >seq17035 Length=221703 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154 ||||||| ||||||||||| ||||| || || | || |||||||| || || ||||||| Sbjct 197027 CTTTTTGGATATTATAATCTGCAAGCGTACGGCCATCTTCAAGCTGCTTACCAGCAAATA 196968 Query 39155 TAAGACGCTGCTGGT-CGGTGG 39175 | ||||| ||||||| |||||| Sbjct 196967 TCAGACGTTGCTGGTCCGGTGG 196946 >seq7668 Length=316181 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || || ||| || || || || |||||||| || ||||| |||| | Sbjct 198728 CACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTT 198669 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| || || || || || ||||||||||| || | ||| | | || ||||| Sbjct 198668 AAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTGTCTTG 198609 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||| | | | | || ||| || || || || | ||||| |||| Sbjct 198608 GATCTTGGATTTCACATTGTCGATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGTTTT 198549 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||| || ||||| || ||||| |||||||| Sbjct 198548 ACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 198516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429267470297864