Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq51452 89.7 4e-13 seq37995 86.0 5e-12 seq19192 82.4 6e-11 >seq51452 Length=252770 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 101041 AGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCC 101100 ||| || || || |||||||||||||| || | || | ||| ||||| || || || Sbjct 3868 AGTAGACTCCTTCTGAATATTGTAATCAGCAAGTGTCCTACCATCCTCCAACTGCTTCCC 3927 Query 101101 CGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTT 101160 ||| | |||||||| || |||||| || | ||| || || || ||| ||| || Sbjct 3928 AGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATGCCCTCCTTATCCTGAATCTTTGCCTT 3987 Query 101161 CACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGT 101220 ||||| | | | ||| |||| | | ||| | || || ||||| ||||| || || Sbjct 3988 CACATTGTCAATCGTGTCTGAGCTCTCAACTTCTAATGTGATGGTTTTTCCCGTTAAGGT 4047 Query 101221 TTTAATAAAAATTTGCATT 101239 ||||| ||| ||||||||| Sbjct 4048 TTTAACAAAGATTTGCATT 4066 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCC 101101 ||||| || |||||||| || || || || | ||| | |||||||||||| || || Sbjct 58246 GTTGACTCCTTTTGAATGTTATAGTCAGCAAGAGTCCTCCCATCTTCCAATTGCTTTCCT 58305 Query 101102 GCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 101161 ||| |||| |||||||| || || || | |||||| ||||| ||||||| || Sbjct 58306 GCAAATATCAGCCTTTGCTGATCCGGTGGGATGCCTTCCTTGTCTTGAATTTTTGCCTTA 58365 Query 101162 ACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGTT 101221 |||| | | | ||| || | | | ||| | || || ||||| || || || || Sbjct 58366 ACATTGTCAATCGTGTCCGAGCTCTCAACTTCCAATGTGATTGTTTTCCCAGTTAAGGTC 58425 Query 101222 TTAATAAAAATTTGCATT 101239 |||| ||| ||||||||| Sbjct 58426 TTAACAAAGATTTGCATT 58443 >seq37995 Length=189229 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 101024 CTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAA 101083 || || |||| ||| | ||||||||||| || ||||||||||| |||| |||| | Sbjct 163954 CTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCAGCCAGAGTTCGACCA 163895 Query 101084 TCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTG 101143 |||||||| ||||| || ||| | || ||||| || ||||| || | ||||||||| Sbjct 163894 TCTTCCAACTGTTTTCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGTATCCCTTCTTTG 163835 Query 101144 TC 101145 || Sbjct 163834 TC 163833 >seq19192 Length=430667 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| || | |||||||| || |||||||||||||| || | || | ||| || Sbjct 373651 CACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATCTGCAAGGGTCCTTCCATCCTC 373710 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 | |||||| || ||| |||| | ||| || |||||| || | || || ||||| Sbjct 373711 AAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCCTG 373770 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTT 101208 || ||| || |||| | | | || |||| | | ||| | ||| || || || Sbjct 373771 GATCTTTGCCTTTACATTGTCGATGGTATCTGAGCTCTCAACTTCAAGGGTGATCGTCTT 373830 Query 101209 GCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 |||||| || ||||||| |||||| ||||| Sbjct 373831 GCCCGTTAAAGTTTTAACAAAAATCTGCAT 373860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409395545656152