Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq44697 210 2e-49 seq38302 196 4e-45 >seq44697 Length=182102 Score = 210 bits (232), Expect = 2e-49 Identities = 560/850 (66%), Gaps = 7/850 (1%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| ||| || ||||||||||| || |||| ||| ||| ||||| |||||||| Sbjct 112995 ACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGCTCCATCCAATCAAAC 113054 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 ||||| || ||||| || ||| | | ||| | | ||||| ||||| ||| Sbjct 113055 GGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAACAATCTATCAGCCACA 113114 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACA-GGTAGCGC 4450 ||||| || || | |||||| | || | || ||||| | | | |||| || ||||| Sbjct 113115 AATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAG-CGCACAAGGCAGCGC 113173 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 | || |||||| |||||| || || |||| | || | || | | || Sbjct 113174 ATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATTCCCTTAACTCGTTC 113233 Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570 | || | || | ||| | | | | | ||||| ||||||||||| |||||||| Sbjct 113234 CTCAGTAAGCTTCGTCCTTAACAAACTATAAAGCAAACAAGCAAAATCACAGTGCAAACC 113293 Query 4571 TTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTT 4630 |||||| || ||| | ||||| || || |||||||| |||||||| || | |||||| Sbjct 113294 TTCGTCCCTAGAAATTAACTCGTTCGAGAAGGTTAATCCAGGCATTAACCCCCGCTTTTT 113353 Query 4631 AAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGC 4690 | ||| |||||||| ||| || || || || || ||||| || ||||| || Sbjct 113354 TAACCAGAATATAGCACAAAAGCTTCCGGAGAAAAAAATACCTTCCACACAAGCAAATGC 113413 Query 4691 TACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGC 4750 || || || | | || | || ||| ||||| || ||||| || || Sbjct 113414 AACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCCAACGTAGGGCCCACTTCGC 113470 Query 4751 TTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGG 4810 || |||| ||| || || || || | | ||| |||||| | |||||||| | Sbjct 113471 CTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATCTGCTTTTTTCGTCAGA 113530 Query 4811 GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGC 4870 ||| | || || | |||| || || || ||||| || || || || ||||| || || Sbjct 113531 GTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGTGGATGTTTTCAATCGC 113590 Query 4871 AATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTT 4929 || || || ||||| |||||| | || || | ||||| ||||| || || ||| Sbjct 113591 GATTTGGAAGCCGTAGAAAGCA-CGGGCCTCGGCAACTTGGACTTCTTTCATGAACCTTC 113649 Query 4930 CTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATA 4989 | ||| |||||| || || ||||| ||| |||||||| || | || |||| | Sbjct 113650 CGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAAGGCAAGGACGTGAGTGA 113709 Query 4990 TAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAA 5049 | || | | ||| | || | || ||| |||||| | ||| || ||||| | Sbjct 113710 TGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGTTATCAGAAGACAAATCGA 113769 Query 5050 CTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGAT 5109 |||||||| ||||||| || || ||| |||||||||||||| |||||| | || | Sbjct 113770 CTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGT 113829 Query 5110 ACTGAATCGG 5119 | ||||| || Sbjct 113830 ATTGAATTGG 113839 >seq38302 Length=59671 Score = 196 bits (216), Expect = 4e-45 Identities = 557/850 (66%), Gaps = 7/850 (1%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| ||| || ||||||||||| || |||| ||| ||| ||||| |||||||| Sbjct 22815 ACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGCTCCATCCAATCAAAC 22874 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 ||||| || ||||| || | | | | ||| | | ||||| ||||| ||| Sbjct 22875 GGATTCTGAGCATTGTACAACTTATTATAACCCAAAGCATCCAACAATCTATCAGCCACA 22934 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACA-GGTAGCGC 4450 ||||| || || | |||||| | || | || ||||| | | | |||| || ||||| Sbjct 22935 AATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAG-CGCACAAGGCAGCGC 22993 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 | || |||||| |||||| || || |||| | || | || | | || Sbjct 22994 ATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATCCCCTTAACTCGTTC 23053 Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570 | || | || | || | | | | | ||||| || |||||||| |||||||| Sbjct 23054 CTCAGTAAGCTTCGTCCTCAACAAACTATAAAGCAAACAAGCGAAATCACAGTGCAAACC 23113 Query 4571 TTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTT 4630 |||||| || ||| | ||||| || || |||||||| |||||||| || | |||||| Sbjct 23114 TTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGCATTAACCCCCGCTTTTT 23173 Query 4631 AAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGC 4690 | ||| |||||||| ||| ||||| || || || ||||| || | ||| || Sbjct 23174 TAACCAGAATATAGCACAAAAGCTTCCAGAGAAAAAAATACCTTCCACACAAGAAAATGC 23233 Query 4691 TACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGC 4750 || || || | | || | || ||| ||||| || ||||| || || Sbjct 23234 AACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCCAACGTAGGGCCCACTTCGC 23290 Query 4751 TTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGG 4810 || |||| ||| || ||||| || | | ||| |||||| | |||||||| | Sbjct 23291 CTTCTTCTCAACACAGGGAATAGTCTCAACTGCGCGGAATAATCTGCTTTTTTCGTCAGA 23350 Query 4811 GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGC 4870 ||| | || || | |||| || || || ||||| || || || || ||||| || || Sbjct 23351 GTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGTGGATGTTTTCAATCGC 23410 Query 4871 AATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTT 4929 || || || ||||| |||||| | || || | ||||| ||||| || || || Sbjct 23411 GATTTGGAAGCCGTAGAAAGCA-CGGGCCTCGGCAACTTGGACTTCTTTCATGAACCTCC 23469 Query 4930 CTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATA 4989 | ||| |||||| || || ||||| ||| |||||||| || | || |||| | Sbjct 23470 CGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAAGGCAAGGACGTGAGTGA 23529 Query 4990 TAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAA 5049 | || | | ||| | || | || ||| |||||| | ||| || |||||| | Sbjct 23530 TGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGGTATCGGAAGATAAATCGA 23589 Query 5050 CTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGAT 5109 ||||||| ||||||| || || ||| |||||||||||||| |||||| | || | Sbjct 23590 CTTCTTCCGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGT 23649 Query 5110 ACTGAATCGG 5119 | ||||| || Sbjct 23650 ATTGAATTGG 23659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426773086451624