Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq32446 98.7 1e-15
seq49945 86.0 9e-12
>seq32446
Length=65746
Score = 98.7 bits (108), Expect = 1e-15
Identities = 136/187 (73%), Gaps = 4/187 (2%)
Strand=Plus/Minus
Query 77882 AGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCA 77941
|||||||| | ||||||| |||||| | ||||| | | ||||| || || |||||
Sbjct 53084 AGATTTGTTTTACCTCTCT--TTCATACTTTGTATACAACTTCTCAAAATCTTCACCCCA 53027
Query 77942 AACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT 78001
| ||| |||||||||| ||| |||| || | || ||||| | |||| | | ||
Sbjct 53026 ACAATCTGCCAATCCAGGAGCCTCACTTGGACAAAATAAAGACCATTGCCCAT-TGCTTT 52968
Query 78002 -AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTAT 78060
|||| || |||||| |||||||| | ||| |||||| || |||||||||| | ||
Sbjct 52967 GGACTCTTTCCATAAAAAGATCAGGCACCCAAAGAGCATAGAAAAGATCTCGGGCCCGAT 52908
Query 78061 GTTCTTC 78067
|||||||
Sbjct 52907 GTTCTTC 52901
>seq49945
Length=41976
Score = 86.0 bits (94), Expect = 9e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457
|||||| || ||||||||||| ||||||||||| || |||||| || ||| | | ||
Sbjct 17068 AGTTCCAGCGTTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 17127
Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516
||||| | || | ||||| || || | ||| || || || || | ||| | |||||
Sbjct 17128 ATATGTCTTGATGACAGATTCAATATCATCCTTG-TGGATCCCAACAGATACTCTCATCA 17186
Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576
||| || || || ||||| || ||| | || || || | ||| || | || |
Sbjct 17187 GCATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 17246
Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625
||||| |||||||| || | || ||||||||| || || || ||
Sbjct 17247 GGGTTTTGAAACCAAAGTAATCATAATCAAAGTCTCTGTCATATATGAT 17295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694207470449920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |