Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq44697 145 1e-29
seq32446 104 3e-17
seq49945 100 4e-16
>seq44697
Length=182102
Score = 145 bits (160), Expect = 1e-29
Identities = 563/876 (64%), Gaps = 18/876 (2%)
Strand=Plus/Plus
Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398
||||| || || || || | ||||| || |||||||| || |||| || ||
Sbjct 112980 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 113039
Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458
||||| ||||||||||||| | |||| || | || | | | || || | | |
Sbjct 113040 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAAC 113099
Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518
| |||||| || || ||||| || || | |||||| || | ||||||||| | ||
Sbjct 113100 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 113159
Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578
|| || || || | |||||| ||| || |||||||| | | ||
Sbjct 113160 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 113219
Query 46579 GATGTTACTGTTTCCTCA-----CTTGGTGGATGCATCAAATGTTTAAACATTAAACATG 46633
| ||| ||||||| ||| || | | |||| | || || |||| |
Sbjct 113220 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTT--AACAAACTATAAAGCA---AACAAG 113274
Query 46634 CAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAG 46693
|||||||||| || | ||||| || ||| |||||| ||||| || || || | ||||
Sbjct 113275 CAAAATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAGAAGGTTAATCCAG 113334
Query 46694 GCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAG-ATCCAGAAAAGAATATG 46752
|||||| || |||||||| | ||| ||||||| | | |||| ||| || || || ||
Sbjct 113335 GCATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAAAAGCTTCCGGAGAAAAAAATA 113393
Query 46753 CCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTG--GCATCATTATGAATCC 46810
||||| ||| || ||||| || | | ||||| || || | | | ||||
Sbjct 113394 CCTTCCACACAAGCAAATGCAACCA--AACGCTCCGCAAATGTTTCGGAACCGTCGATCC 113451
Query 46811 ACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 46870
| | | | ||||| | ||||| |||| ||||| || || || || | || || |
Sbjct 113452 AACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATA 113511
Query 46871 GAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTG 46930
| ||||||| ||| || || | || | |||| | ||||| ||||| || |
Sbjct 113512 ATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGG 113571
Query 46931 AATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTA 46990
| || ||||||||||| || || || || ||||| ||| | || || | || || |
Sbjct 113572 AGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGGA 113631
Query 46991 CCTCTGTACAAAATCGTTCAGAC-AAATTCTCATTCACTATTCCATCACTAGCAGCAAAA 47049
| ||| | || | | ||| | | | || || || || || || || ||||||
Sbjct 113632 CTTCT-TTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAA 113690
Query 47050 AATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTG 47109
|| || | || || | || |||| ||||| ||| || || | | ||||| | |
Sbjct 113691 AAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGG 113750
Query 47110 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATAC 47169
|||| || | ||| ||||||||||| |||||||| || || |||||||| |||
Sbjct 113751 TTATCAGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTAC 113810
Query 47170 ATATTCCATATATCACGATATTGGATCGGAAAAATA 47205
|| | ||| || | | ||||| || || || |||
Sbjct 113811 ATTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 113846
>seq32446
Length=65746
Score = 104 bits (114), Expect = 3e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052
|||||| |||||||| | || ||||| ||||||||||||||| ||| ||| | | ||
Sbjct 52239 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCAAATG 52180
Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111
|| || | ||| | | ||| ||||| | ||| || ||||| |||| || | |||||
Sbjct 52179 ATAAGTCTTGATAGCAGATTCAATATCATCCTTG-TGGATTCCAACAGAAACTCTCATCA 52121
Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171
|||||| || || | ||||||| || ||| || || || | ||| || ||||
Sbjct 52120 GCATATGTTGTGGCCTTTCTACAACATTTCCATTAATCTTTAAGAGGTAAGACCGCTCCA 52061
Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220
| ||||| |||||||| || | || |||||| || || || || ||
Sbjct 52060 AGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTGTCATATATGAT 52012
Score = 98.7 bits (108), Expect = 1e-15
Identities = 136/187 (73%), Gaps = 4/187 (2%)
Strand=Plus/Minus
Query 76477 AGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCA 76536
|||||||| | | |||||||||||| | |||||| ||| ||||| || || |||||
Sbjct 53084 AGATTTGTTTTAC--CTCTCTTTCATACTTTGTATACAACTTCTCAAAATCTTCACCCCA 53027
Query 76537 AACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT 76596
| ||| |||| |||||| ||| | ||||| | || ||||| | |||| | | ||
Sbjct 53026 ACAATCTGCCAATCCAGGAGCCTCACTTGGACAAAATAAAGACCATTGCCCAT-TGCTTT 52968
Query 76597 -AACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTAC 76655
|| | || |||||| |||||||| | ||| |||||| || |||||||||| | |
Sbjct 52967 GGACTCTTTCCATAAAAAGATCAGGCACCCAAAGAGCATAGAAAAGATCTCGGGCCCGAT 52908
Query 76656 GTTCTTC 76662
|||||||
Sbjct 52907 GTTCTTC 52901
Score = 87.8 bits (96), Expect = 3e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 76270 AAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTAT 76329
|||||| || ||||| |||||||||||||| ||| ||| | | | || | || ||
Sbjct 53478 AAGAGCAATTGATGCAAGATTACAAACGGCAGTTTCAGTAGGACTTGTGTACTCAATAAT 53419
Query 76330 CTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTT 76389
|| || || | ||| | |||||||||| ||||||||||| |||||||| ||| | ||
Sbjct 53418 TTCAGTACACAAGTTAGAAGACTTGATAGTGCCAAGATTTTGCTGGTTGCTTTTTCTATT 53359
Query 76390 ACATGAGTCCT 76400
||| || ||||
Sbjct 53358 ACAAGAATCCT 53348
>seq49945
Length=41976
Score = 100 bits (110), Expect = 4e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052
|||||| || ||||| ||||| ||||||||||||||||||||| || ||| | | ||
Sbjct 17068 AGTTCCAGCGTTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 17127
Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111
||||| | || || | ||| ||||| | ||| || || || |||| || | |||||
Sbjct 17128 ATATGTCTTGATGACAGATTCAATATCATCCTTG-TGGATCCCAACAGATACTCTCATCA 17186
Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171
||| || || || | ||||||| ||| | || || || | ||| || | || |
Sbjct 17187 GCATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 17246
Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220
||||| |||||||| || | || ||||||||| || || || ||
Sbjct 17247 GGGTTTTGAAACCAAAGTAATCATAATCAAAGTCTCTGTCATATATGAT 17295
Score = 91.5 bits (100), Expect = 2e-13
Identities = 154/223 (69%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812
|||||| || || | |||||| ||||||| ||| | || | || ||| |||| ||| ||
Sbjct 16646 ACCTCCTTGGTCAACATATCTAGCAGTGTCATTGAATACACGCAGCATAGGAACAATTCC 16705
Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872
|| ||||| |||||||||||| ||| ||||| ||| ||||| || || | |||
Sbjct 16706 ATTTGATGTCCCATTTGTTCCACGAATGTAACTCCCAGTAGCACGTATGTTGTGCACAGA 16765
Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932
| || ||||| || || ||| || | |||||| || | || ||||| ||
Sbjct 16766 AACTCCAATTCCCCCAGCTGATTTGCTAATAACAGCACACTCCTTAAGAGTATCATATAT 16825
Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975
||||| ||||| || || ||||| | || || ||||||
Sbjct 16826 ACCCTCAATACTGTCCTCTTTCATGCATATCAGGAAGCAGCTA 16868
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712460940264960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |