Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq44697 145 1e-29 seq32446 104 3e-17 seq49945 100 4e-16 >seq44697 Length=182102 Score = 145 bits (160), Expect = 1e-29 Identities = 563/876 (64%), Gaps = 18/876 (2%) Strand=Plus/Plus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 ||||| || || || || | ||||| || |||||||| || |||| || || Sbjct 112980 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 113039 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| ||||||||||||| | |||| || | || | | | || || | | | Sbjct 113040 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAAC 113099 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 | |||||| || || ||||| || || | |||||| || | ||||||||| | || Sbjct 113100 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 113159 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 || || || || | |||||| ||| || |||||||| | | || Sbjct 113160 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 113219 Query 46579 GATGTTACTGTTTCCTCA-----CTTGGTGGATGCATCAAATGTTTAAACATTAAACATG 46633 | ||| ||||||| ||| || | | |||| | || || |||| | Sbjct 113220 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTT--AACAAACTATAAAGCA---AACAAG 113274 Query 46634 CAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAG 46693 |||||||||| || | ||||| || ||| |||||| ||||| || || || | |||| Sbjct 113275 CAAAATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAGAAGGTTAATCCAG 113334 Query 46694 GCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAG-ATCCAGAAAAGAATATG 46752 |||||| || |||||||| | ||| ||||||| | | |||| ||| || || || || Sbjct 113335 GCATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAAAAGCTTCCGGAGAAAAAAATA 113393 Query 46753 CCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTG--GCATCATTATGAATCC 46810 ||||| ||| || ||||| || | | ||||| || || | | | |||| Sbjct 113394 CCTTCCACACAAGCAAATGCAACCA--AACGCTCCGCAAATGTTTCGGAACCGTCGATCC 113451 Query 46811 ACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 46870 | | | | ||||| | ||||| |||| ||||| || || || || | || || | Sbjct 113452 AACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATA 113511 Query 46871 GAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTG 46930 | ||||||| ||| || || | || | |||| | ||||| ||||| || | Sbjct 113512 ATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGG 113571 Query 46931 AATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTA 46990 | || ||||||||||| || || || || ||||| ||| | || || | || || | Sbjct 113572 AGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGGA 113631 Query 46991 CCTCTGTACAAAATCGTTCAGAC-AAATTCTCATTCACTATTCCATCACTAGCAGCAAAA 47049 | ||| | || | | ||| | | | || || || || || || || |||||| Sbjct 113632 CTTCT-TTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAA 113690 Query 47050 AATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTG 47109 || || | || || | || |||| ||||| ||| || || | | ||||| | | Sbjct 113691 AAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGG 113750 Query 47110 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATAC 47169 |||| || | ||| ||||||||||| |||||||| || || |||||||| ||| Sbjct 113751 TTATCAGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTAC 113810 Query 47170 ATATTCCATATATCACGATATTGGATCGGAAAAATA 47205 || | ||| || | | ||||| || || || ||| Sbjct 113811 ATTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 113846 >seq32446 Length=65746 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| | || ||||| ||||||||||||||| ||| ||| | | || Sbjct 52239 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCAAATG 52180 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 || || | ||| | | ||| ||||| | ||| || ||||| |||| || | ||||| Sbjct 52179 ATAAGTCTTGATAGCAGATTCAATATCATCCTTG-TGGATTCCAACAGAAACTCTCATCA 52121 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 |||||| || || | ||||||| || ||| || || || | ||| || |||| Sbjct 52120 GCATATGTTGTGGCCTTTCTACAACATTTCCATTAATCTTTAAGAGGTAAGACCGCTCCA 52061 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 | ||||| |||||||| || | || |||||| || || || || || Sbjct 52060 AGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTGTCATATATGAT 52012 Score = 98.7 bits (108), Expect = 1e-15 Identities = 136/187 (73%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 76477 AGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCA 76536 |||||||| | | |||||||||||| | |||||| ||| ||||| || || ||||| Sbjct 53084 AGATTTGTTTTAC--CTCTCTTTCATACTTTGTATACAACTTCTCAAAATCTTCACCCCA 53027 Query 76537 AACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT 76596 | ||| |||| |||||| ||| | ||||| | || ||||| | |||| | | || Sbjct 53026 ACAATCTGCCAATCCAGGAGCCTCACTTGGACAAAATAAAGACCATTGCCCAT-TGCTTT 52968 Query 76597 -AACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTAC 76655 || | || |||||| |||||||| | ||| |||||| || |||||||||| | | Sbjct 52967 GGACTCTTTCCATAAAAAGATCAGGCACCCAAAGAGCATAGAAAAGATCTCGGGCCCGAT 52908 Query 76656 GTTCTTC 76662 ||||||| Sbjct 52907 GTTCTTC 52901 Score = 87.8 bits (96), Expect = 3e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 76270 AAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTAT 76329 |||||| || ||||| |||||||||||||| ||| ||| | | | || | || || Sbjct 53478 AAGAGCAATTGATGCAAGATTACAAACGGCAGTTTCAGTAGGACTTGTGTACTCAATAAT 53419 Query 76330 CTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTT 76389 || || || | ||| | |||||||||| ||||||||||| |||||||| ||| | || Sbjct 53418 TTCAGTACACAAGTTAGAAGACTTGATAGTGCCAAGATTTTGCTGGTTGCTTTTTCTATT 53359 Query 76390 ACATGAGTCCT 76400 ||| || |||| Sbjct 53358 ACAAGAATCCT 53348 >seq49945 Length=41976 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| || ||||| ||||| ||||||||||||||||||||| || ||| | | || Sbjct 17068 AGTTCCAGCGTTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 17127 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 ||||| | || || | ||| ||||| | ||| || || || |||| || | ||||| Sbjct 17128 ATATGTCTTGATGACAGATTCAATATCATCCTTG-TGGATCCCAACAGATACTCTCATCA 17186 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| || || || | ||||||| ||| | || || || | ||| || | || | Sbjct 17187 GCATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 17246 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | || ||||||||| || || || || Sbjct 17247 GGGTTTTGAAACCAAAGTAATCATAATCAAAGTCTCTGTCATATATGAT 17295 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| || || | |||||| ||||||| ||| | || | || ||| |||| ||| || Sbjct 16646 ACCTCCTTGGTCAACATATCTAGCAGTGTCATTGAATACACGCAGCATAGGAACAATTCC 16705 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| |||||||||||| ||| ||||| ||| ||||| || || | ||| Sbjct 16706 ATTTGATGTCCCATTTGTTCCACGAATGTAACTCCCAGTAGCACGTATGTTGTGCACAGA 16765 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || ||||| || || ||| || | |||||| || | || ||||| || Sbjct 16766 AACTCCAATTCCCCCAGCTGATTTGCTAATAACAGCACACTCCTTAAGAGTATCATATAT 16825 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| ||||| || || ||||| | || || |||||| Sbjct 16826 ACCCTCAATACTGTCCTCTTTCATGCATATCAGGAAGCAGCTA 16868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712460940264960