Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq44697 141 1e-28 >seq44697 Length=182102 Score = 141 bits (156), Expect = 1e-28 Identities = 548/852 (64%), Gaps = 17/852 (2%) Strand=Plus/Plus Query 23218 TTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCTCTAATGATATATT 23276 |||||||| |||||||| | |||| || || ||||| ||||| || | ||| || Sbjct 112980 TTTTGATACTCCCCAACTC-TCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 113038 Query 23277 TTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGAT--AATTCCTTT 23334 ||||| ||||||| ||||| || ||| || || ||| ||| | || | | Sbjct 113039 CTCCATCCAATCAAACGGATTCTGAGCATTGTA--CAACTTATCATAACCCAAAGCATCC 113096 Query 23335 AAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATT 23394 || | ||||| || ||||||||||| |||| | ||||||||| || || || | Sbjct 113097 AACAATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACC 113156 Query 23395 AGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATT 23454 || || | ||||||| | | || |||| || ||||||||| || Sbjct 113157 AGCGCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACA 113216 Query 23455 ATTTGAACAATAACT---TCTTCACTAGG-TGGATATTTTAAATACTTAAACAATAAACA 23510 ||| | ||||| || ||| || | | | || | | ||| || | ||||| Sbjct 113217 ATTC---CCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAACTATAA-AGCAAACA 113272 Query 23511 TGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCC 23570 ||||||||||| || | ||||| |||||| ||| || || || || || |||||||| Sbjct 113273 AGCAAAATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAGAAGGTTAATCC 113332 Query 23571 TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAAT 23630 |||||||| || || ||||| | ||| ||||| ||| ||| |||||| || ||||| Sbjct 113333 AGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTTCCGGAGAAAAAAAT 113392 Query 23631 ACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAAT 23690 ||| || ||| ||||| || || | ||| |||||||| | || | || Sbjct 113393 ACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTT---TCGGAACCGTCGAT 113449 Query 23691 CCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAA 23750 ||| | | ||| || |||||| | ||||| || || |||| ||| || Sbjct 113450 CCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAA 113509 Query 23751 GAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTC 23810 | ||||||| ||| || | || || | || | || | ||| ||||| || Sbjct 113510 TAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTC 113569 Query 23811 AGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTG 23870 || || || |||||||| || || || || || || ||| | || || | | ||| Sbjct 113570 GGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTG 113629 Query 23871 AACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAA 23930 || || || | || ||| |||| ||||| ||| || || || || ||||| Sbjct 113630 GACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAA 113689 Query 23931 GAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCATT 23990 || ||||| || | | || ||||| |||||| | | || || ||| ||| | | Sbjct 113690 AAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACG 113749 Query 23991 AATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATA 24050 |||| || ||||| ||||| ||| | ||||| ||| || ||||| || || Sbjct 113750 GTTATCAGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTA 113809 Query 24051 CATTAGCCAAAT 24062 |||| |||||| Sbjct 113810 CATTTCCCAAAT 113821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521141679819200