Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq29194 87.8 1e-12 seq111358 82.4 5e-11 >seq29194 Length=272514 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 ||| |||||||| | |||||| || || | || ||| || ||||||||||||||||| Sbjct 233945 AGTAACATGAGCTACCATGCATGTCAACAAAGCATATGATGCGATGTTAAATGGCACTCC 234004 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATA 101871 || |||||||| || || | ||||||| ||||||||| | || |||| ||||| Sbjct 234005 CAAACCCATATCTGCAGAGCGCTGATACATTTGACAGGATAACTCCCCATTGGCAACATA 234064 Query 101872 AAATTG 101877 ||| || Sbjct 234065 AAACTG 234070 >seq111358 Length=10296 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 |||||||| |||||||| || | | | ||| |||||||||||||||||||| | Sbjct 6072 ACATGAGCTATCATGCATGTCAGCAAGGCATAAGATGCAATGTTAAATGGCACTCCCAGA 6013 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGA 101850 ||||||||||| |||| ||||||| |||||||| Sbjct 6012 CCCATATCAGCAGATCGCTGATACATCTGACAGGA 5978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357158373710357