Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq508016 143 3e-29 seq80028 84.2 3e-11 >seq508016 Length=803 Score = 143 bits (158), Expect = 3e-29 Identities = 361/545 (66%), Gaps = 8/545 (1%) Strand=Plus/Minus Query 24170 AATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 24229 ||| || ||||| || || || | ||| ||||||| || |||||||| | ||| ||||| Sbjct 795 AATCAACTCGTTCGAGAAGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATAT 736 Query 24230 GGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTT 24288 | | || | | | |||||||| ||||| ||||| || ||||| |||| | | | Sbjct 735 AG-CACAGAAGCTTCCAGAAAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCT 677 Query 24289 CTCCATAAC---CGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA 24345 | || | ||| | ||| ||||| | | ||||| | |||||||| | | Sbjct 676 CCGCAAATGTTTCGGAACCGTCG---ATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAA 620 Query 24346 CACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACAT 24405 |||| || || ||||| | || || | | ||||||| | | || || | | Sbjct 619 CACAGGGGATAGTCTCAACTGCGCGGAACAATCTGCTTTTTTCTTCAGAGTCCTTGATGT 560 Query 24406 ATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATC 24465 | | || | | ||||| ||||| || ||||| ||||||||||| || ||||| || | Sbjct 559 ACGACTCTAGAAGCAGACTGTACATCTCGGAATGGATGTTTTCAATCGCGATTTGGAAGC 500 Query 24466 CGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTT 24525 |||||||| | ||||| | || || |||||| | || | | | |||| |||| Sbjct 499 CGTAGAAAGCACGCGCCTCCGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTT 440 Query 24526 CATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTT 24585 | || || ||||| ||| || ||||| || | ||||| | || |||| ||| Sbjct 439 CTAAAACGATGCCGTCTGAGGCGGCGAAAAAGGCAAGGACATGAGTGATGAAATGCCTTT 380 Query 24586 CGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTG 24645 || | || ||||| | | ||| | | | ||||| ||||| ||| ||||| || | | Sbjct 379 CGCCGGGAGTTAGGGTTTCCCAGTGACGGGTATCTGAAGATAAATCGACTTCCTCAGCAG 320 Query 24646 TCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAA 24705 |||| || || || || ||||| ||||| | ||| || | | ||||||||||| | Sbjct 319 TCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGA 260 Query 24706 AAATA 24710 | ||| Sbjct 259 ACATA 255 >seq80028 Length=5765 Score = 84.2 bits (92), Expect = 3e-11 Identities = 125/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 53924 TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 |||||||| || ||||||||| ||||| || || |||||| || |||||||| Sbjct 307 TCTCTTTCATACTTTGTATACAACTTCTCAAAATCTTCACCCCAACAATCTGCCAATCCA 248 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT--CACTCGTTTCATAA 54041 ||| ||| ||||| | || ||||| | |||| | ||| |||| || ||||| Sbjct 247 GGAGCCTCACTTGGACAAAATAAAGACCATTGACCGT--TGCTTTGGACTCTTTCCATAA 190 Query 54042 AGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTC 54093 | |||||||| | ||||||||| ||| || ||||||| || | |||||| || Sbjct 189 AAAGATCAGGCACCCAAAGAGC-ATAGAAAAGATCTCGGGCACGATGTTCTTC 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586822503057360