Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq19970 102 7e-17 seq131271 98.7 8e-16 seq22395 98.7 8e-16 seq57534 91.5 1e-13 seq10275 91.5 1e-13 seq39326 89.7 4e-13 seq21203 84.2 2e-11 seq20754 82.4 6e-11 >seq19970 Length=23264 Score = 102 bits (112), Expect = 7e-17 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | || ||| | || || ||||||||||| ||| || | | Sbjct 314 ATGCAAATCTTTGTTAAGACACTAACTGGAAAAACCATTACACTCGAGGTTGAGAACTCC 255 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || |||| ||||||| || || ||||| | || ||||||| Sbjct 254 GACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 195 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 ||||| | || ||||| || |||||||| |||||| || || ||| || ||||||| Sbjct 194 CAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTT--GCTGATTACA 137 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 |||||||||||||||| ||||| || | ||||| || Sbjct 136 ATATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCG 100 >seq131271 Length=1147 Score = 98.7 bits (108), Expect = 8e-16 Identities = 163/232 (70%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | || ||| | || || || |||||||| ||| || | | Sbjct 105 ATGCAAATCTTTGTTAAGACACTAACTGGAAAGACCATTACACTCGAGGTTGAGAACTCC 164 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || |||| ||||||| || || ||||| | | | ||||||| Sbjct 165 GACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGATTCCTCC-AGATCAA 223 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 ||||| | || ||||| || |||||||| |||||| || || || | || ||||||| Sbjct 224 CAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACAC--TTGCTGATTACA 281 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGGTA 29191 |||||||||||||||| ||||| || | ||||| || | || ||||| || Sbjct 282 ATATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGGTTA 333 >seq22395 Length=162664 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | ||||| || ||||| |||||||| || ||| || | | Sbjct 26861 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 26802 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| ||| | | | || | ||| || ||| ||||| || ||| | || ||| || Sbjct 26801 AGACACGATTGACAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCACCAGACCA 26742 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| || ||||||||||| || || || |||| ||| | || | || |||||||| Sbjct 26741 ACAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCAGATTACAA 26682 Query 29141 TATTCAGAAGGAATCTACTCTTCA 29164 |||||||||||| |||||||| || Sbjct 26681 TATTCAGAAGGAGTCTACTCTCCA 26658 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | ||||| || || || ||||||||||| ||| || | | Sbjct 27317 AATGCAAATCTTTGTTAAAACCTTAACCGGGAAAACCATTACATTGGAAGTTGAGAGCTC 27258 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| |||||| ||||| |||||| | || ||| || Sbjct 27257 GGACACAATTGATAATGTTAAGGCAAAAATCCAAGATAAGGAAGGTATCCCGCCAGACCA 27198 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || || || || || || || ||| | |||||| | ||| |||| ||||| || Sbjct 27197 GCAGAGGCTGATTTTCGCTGGGAAGCAATTAGAAGATGGAAGAACACTGGCTGATTATAA 27138 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||| || |||||| | || | |||| |||| || Sbjct 27137 CATCCAGAAGGAATCCACCCTTCACCTTGTTCTCAGATTGAGAGGTGG 27090 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | ||||| ||||| || || || || || ||| ||| | | Sbjct 27545 AATGCAAATTTTTGTTAAAACCTTGACTGGGAAGACAATCACATTGGAAGTCGAAAGCTC 27486 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || ||| | | || ||||| ||||| ||||| |||||| | || |||||| Sbjct 27485 GGACACGATTGATAATGTTAAGGCCAAAATCCAAGATAAGGAAGGTATTCCACCAGATCA 27426 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||| | | |||||||| || ||||| || || ||| ||| | || |||||||| Sbjct 27425 ACAACGTTTGATCTTTGCAGGAAAACAGCTCGAGGATGGACGGACTCTCGCGGATTACAA 27366 Query 29141 TATTCAGAAGGAATCTACTCTTCAC 29165 |||||| ||||| || || || ||| Sbjct 27365 TATTCAAAAGGAGTCAACGCTCCAC 27341 >seq57534 Length=59227 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | ||| |||||| ||||| |||||||| || ||||| || || || Sbjct 10884 GACAAGGAAGGAATTCCCCCAGATCAGCAAAGGCTTATCTTCGCCGGCAAGCAGCTTGAG 10825 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || | ||| | ||||||||||| || |||||||||||||| |||||| |||| | Sbjct 10824 GACGGCCGTACTCTCGCCGATTACAACATCCAGAAGGAATCTACCCTTCACTTGGTCCTC 10765 Query 29175 CGATTACGAGGAGGG 29189 || | ||||| ||| Sbjct 10764 CGTCTCCGAGGTGGG 10750 >seq10275 Length=89473 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || ||||||| | || || ||||| || ||| ||| ||| | | Sbjct 10896 ATGCAAATCTTTGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 10837 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| || ||| || || ||||| | || ||||||| Sbjct 10836 GACACAATTGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAA 10777 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| || || || |||||||| | ||| | || |||||||| Sbjct 10776 CAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGAACCCTAGCTGATTACAAC 10717 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 || ||||||||||| ||||||||| ||||| Sbjct 10716 ATCCAGAAGGAATCAACTCTTCACTTGGTG 10687 >seq39326 Length=18362 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| | || || ||||| || ||| ||| ||| | | Sbjct 7084 ATGCAAATCTTCGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTTGAAAGCTCT 7025 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| || ||| || || ||||| | || |||||| Sbjct 7024 GACACTATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAG 6965 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || || | |||||||| || || || |||||||| || || ||| || ||||||| Sbjct 6964 CAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGAACCCTA--GCTGATTACA 6907 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 | || ||||||||||| ||||||||| ||||| Sbjct 6906 ACATCCAGAAGGAATCAACTCTTCACTTGGTG 6875 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| | || || ||||| || ||| ||| ||| | | Sbjct 7312 ATGCAAATCTTCGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTTGAAAGCTCT 7253 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| || ||| || || ||||| | || |||||| Sbjct 7252 GACACTATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAG 7193 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || || | |||||||| || || || |||||||| || || ||| || ||||||| Sbjct 7192 CAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGAACCCTA--GCTGATTACA 7135 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 | || ||||||||||| ||||||||| ||||| Sbjct 7134 ACATCCAGAAGGAATCAACTCTTCACTTGGTG 7103 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| | || || ||||| || ||| ||| ||| | | Sbjct 7540 ATGCAAATCTTCGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTTGAAAGCTCT 7481 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| || ||| || || ||||| | || |||||| Sbjct 7480 GACACTATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAG 7421 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || || | |||||||| || || || |||||||| || || ||| || ||||||| Sbjct 7420 CAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGAACCCTA--GCTGATTACA 7363 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 | || ||||||||||| ||||||||| ||||| Sbjct 7362 ACATCCAGAAGGAATCAACTCTTCACTTGGTG 7331 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| | || || ||||| || ||| ||| ||| | | Sbjct 7768 ATGCAAATCTTCGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTTGAAAGCTCT 7709 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| || ||| || || ||||| | || |||||| Sbjct 7708 GACACTATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAG 7649 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || || | |||||||| || || || |||||||| || || ||| || ||||||| Sbjct 7648 CAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGAACCCTA--GCTGATTACA 7591 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 | || ||||||||||| ||||||||| ||||| Sbjct 7590 ACATCCAGAAGGAATCAACTCTTCACTTGGTG 7559 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| | || || ||||| || ||| ||| ||| | | Sbjct 7996 ATGCAAATCTTCGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTTGAAAGCTCT 7937 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| || ||| || || ||||| | || |||||| Sbjct 7936 GACACTATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAG 7877 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || || | |||||||| || || || |||||||| || || ||| || ||||||| Sbjct 7876 CAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGAACCCTA--GCTGATTACA 7819 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 | || ||||||||||| ||||||||| ||||| Sbjct 7818 ACATCCAGAAGGAATCAACTCTTCACTTGGTG 7787 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| | || || ||||| || ||| ||| ||| | | Sbjct 8224 ATGCAAATCTTCGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTTGAAAGCTCT 8165 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| || ||| || || ||||| | || |||||| Sbjct 8164 GACACTATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAG 8105 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || || | |||||||| || || || |||||||| || || ||| || ||||||| Sbjct 8104 CAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGAACCCTA--GCTGATTACA 8047 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 | || ||||||||||| ||||||||| ||||| Sbjct 8046 ACATCCAGAAGGAATCAACTCTTCACTTGGTG 8015 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || ||||||| | || || ||||| || ||| ||| ||| | | Sbjct 8452 ATGCAAATCTTTGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 8393 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| || ||| || || ||||| | || |||||| Sbjct 8392 GACACAATTGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAG 8333 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || || | |||||||| || || || |||||||| || || ||| || ||||||| Sbjct 8332 CAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGAACCCTA--GCTGATTACA 8275 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 | || ||||||||||| ||||||||| ||||| Sbjct 8274 ACATCCAGAAGGAATCAACTCTTCACTTGGTG 8243 >seq21203 Length=98475 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||||||||| | || ||||| || ||||| || ||||| || ||||| |||||| Sbjct 51077 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAGCTGGAA 51018 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||| || |||| |||||||| |||||||| ||||| ||||||||| | || || Sbjct 51017 GATGGGCGGACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCACCTTGTTTT 50959 >seq20754 Length=265263 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| ||||| ||||||| ||||| || || ||||| || ||| ||| | | Sbjct 216149 ATGCAGATATTTGTCAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTGGAGAGCTCT 216090 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | ||| |||||| ||||||||||| | || |||||| Sbjct 216089 GACACTATTGACAACGTGAAGGCCAAAATTCAGGATAAAGAAGGGATCCCACCAGATCAG 216030 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || || ||||| || || || ||||| ||| || | || ||||||||| Sbjct 216029 CAGAGGCTCATATTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTTGCAGATTACAAT 215970 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||| |||||||| || || ||| | ||| Sbjct 215969 ATTCAAAAGGAATCCACACTCCACCTTGTG 215940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423483130745585