Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq22395 98.7 8e-16 seq19970 89.7 4e-13 seq131271 86.0 5e-12 seq57534 82.4 6e-11 seq20754 82.4 6e-11 >seq22395 Length=162664 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | ||||| || ||||| |||||||| || ||| || | | Sbjct 26861 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 26802 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| ||| | | | || | ||| || ||| ||||| || ||| | || ||| || Sbjct 26801 AGACACGATTGACAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCACCAGACCA 26742 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| || ||||||||||| || || || ||||| ||| | || | || |||||||| Sbjct 26741 ACAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCAGATTACAA 26682 Query 25214 TATTCAAAAGGAATCTACTCTTCA 25237 |||||| ||||| |||||||| || Sbjct 26681 TATTCAGAAGGAGTCTACTCTCCA 26658 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | ||||| ||||| || ||||| ||||| ||| || | | Sbjct 110935 AATGCAAATCTTTGTTAAAACCTTGACCGGGAAAACAATTACATTGGAAGTTGAGAGCTC 110876 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| |||||| ||||| |||||| | || || || Sbjct 110875 GGACACTATTGATAATGTTAAGGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 110816 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||| || || |||||||| || |||||||||||| ||| |||| ||||| || Sbjct 110815 ACAAAGGCTGATTTTTGCGGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 110756 Query 25214 TATTCAAAAGGAATCTACTCTTCAC 25238 |||||||||||| || || || ||| Sbjct 110755 TATTCAAAAGGAGTCAACACTCCAC 110731 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| || ||| | || ||| || || ||||| || ||||| || |||||||||||| Sbjct 110385 GATAAGGAGGGTATCCCACCAGACCAGCAGAGACTGATTTTTGCAGGGAAACAATTGGAA 110326 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | ||| | || ||||| ||||||||||||||||| || |||||| Sbjct 110325 GATGGAAGGACTCTCGCAGATTATAATATTCAAAAGGAATCCACCCTTCAC 110275 >seq19970 Length=23264 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | || ||| | || || ||||||||||| ||| || | | Sbjct 314 ATGCAAATCTTTGTTAAGACACTAACTGGAAAAACCATTACACTCGAGGTTGAGAACTCC 255 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | || ||||||| || || ||||| | || ||||||| Sbjct 254 GACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 195 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 ||||| | || ||||| || |||||| | |||||| || || ||| || ||||||| Sbjct 194 CAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTT--GCTGATTACA 137 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||||| |||||||| ||||| || | ||||| || Sbjct 136 ATATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCG 100 >seq131271 Length=1147 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/232 (69%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | || ||| | || || || |||||||| ||| || | | Sbjct 105 ATGCAAATCTTTGTTAAGACACTAACTGGAAAGACCATTACACTCGAGGTTGAGAACTCC 164 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | || ||||||| || || ||||| | | | ||||||| Sbjct 165 GACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGATTCCTCC-AGATCAA 223 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 ||||| | || ||||| || |||||| | |||||| || || || | || ||||||| Sbjct 224 CAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACAC--TTGCTGATTACA 281 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGGTA 25264 ||||||| |||||||| ||||| || | ||||| || | || ||||| || Sbjct 282 ATATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGGTTA 333 >seq57534 Length=59227 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || ||||| | ||| |||||| ||||| |||||||| || ||||| || | || Sbjct 10884 GACAAGGAAGGAATTCCCCCAGATCAGCAAAGGCTTATCTTCGCCGGCAAGCAGCTTGAG 10825 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || | ||| | ||||||||||| || || ||||||||||| |||||| |||| | Sbjct 10824 GACGGCCGTACTCTCGCCGATTACAACATCCAGAAGGAATCTACCCTTCACTTGGTCCTC 10765 Query 25248 CGATTACGAGGAGGG 25262 || | ||||| ||| Sbjct 10764 CGTCTCCGAGGTGGG 10750 >seq20754 Length=265263 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| ||||| ||||||| ||||| || || ||||| || ||| ||| | | Sbjct 216149 ATGCAGATATTTGTCAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTGGAGAGCTCT 216090 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | | ||| |||||| ||||||||||| | || |||||| Sbjct 216089 GACACTATTGACAACGTGAAGGCCAAAATTCAGGATAAAGAAGGGATCCCACCAGATCAG 216030 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || || || ||||| || || || |||| ||| || | || ||||||||| Sbjct 216029 CAGAGGCTCATATTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTTGCAGATTACAAT 215970 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTG 25244 |||||||||||||| || || ||| | ||| Sbjct 215969 ATTCAAAAGGAATCCACACTCCACCTTGTG 215940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406142642608298