Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq914224 107 3e-18 seq19970 100 4e-16 seq19239 100 4e-16 seq22395 98.7 1e-15 seq24017 93.3 6e-14 seq131271 91.5 2e-13 seq188498 89.7 8e-13 seq21203 86.0 9e-12 >seq914224 Length=857 Score = 107 bits (118), Expect = 3e-18 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| || || | |||||||| || ||| ||||| || ||||||||||| ||||| ||| Sbjct 232 ATATTGTAGTCAGCAAGAGTTCGGCCATCCTCTAACTGCTTTCCAGCAAAGATCAACCTT 173 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||||||||| |||||||| Sbjct 172 TGCTGATCTGGAGGAATTCCTTCCTTATCTTG 141 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || || || | |||| ||| | ||| ||||| || ||||| || || | | Sbjct 733 CCACCCCTCAGCCTCAGCACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGCA 674 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | ||| |||||||| || ||||| || |||||||| |||||| Sbjct 673 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGA 614 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||||||||| || Sbjct 613 ATGCCTTCTTTATCCTG 597 >seq19970 Length=23264 Score = 100 bits (110), Expect = 4e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 146058 TAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTC 146117 |||| | || || | ||| | ||| ||||| || ||||| ||||| | ||| |||| Sbjct 95 TAAGACGCAACACAAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCAAGTGTTC 154 Query 146118 TGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTT 146177 | ||| || | |||||||||||||||||| || ||||| ||||| ||||||||||||| Sbjct 155 GACCATCTTCAAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCTGGAGGAATTCCTT 214 Query 146178 CTTTATCTTG 146187 | || ||||| Sbjct 215 CCTTGTCTTG 224 >seq19239 Length=237608 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| ||||| || || || |||| || | || |||||||| ||||| ||||| Sbjct 131808 GTTCCTCCTCTGAGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCA 131867 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||| | ||| || || ||||||||||||||||||| || ||||| || ||| Sbjct 131868 GCCAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAGCCTCTGCTGGTCAGGA 131927 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || |||||||| || || Sbjct 131928 GGTATCCCTTCTTTGTCCTG 131947 >seq22395 Length=162664 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/238 (68%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| || || || | || | || | ||| || || ||| || |||||||||||| Sbjct 27544 TTCCACCCCTTAGCCTGAGAACTAGGTGGAGAGTTGACTCCTTTTGA-ATATTATAATCT 27602 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||| | | ||| || ||||| || || ||||| |||| || ||||||||||| Sbjct 27603 GCGAGAGTACGCCCATCTTCCAATTGCTTCCCTGCAAATATCAGCCTCTGCTGATCCGGT 27662 Query 146168 GGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCT 146227 || || || ||||| ||||| || || || ||||| Sbjct 27663 GGGATACCCTCTTTGTCTTGTATTTTCGCCTTAACATTGTCTATGGTGTCCGAGCTTTCA 27722 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT-TTTATTA 146284 ||||| |||||||| ||||| || ||||| ||||||| || || ||||| | ||||| Sbjct 27723 ACTTCCAGTGTGATGGTTTTTCCAGTTAAGGTTTTAACAAAGATCTGCATCTGTATTA 27780 Score = 96.9 bits (106), Expect = 5e-15 Identities = 132/191 (69%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 146088 CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAA 146147 |||| || ||||||||||||| ||||| | | ||| || ||||| || || ||||||| Sbjct 110746 CTTTTGA-ATATTATAATCTGCCAGAGTGCGCCCATCTTCCAATTGCTTCCCCGCAAAAA 110804 Query 146148 TCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNN 146207 ||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 110805 TCAGCCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTCGCCTTAACATTAT 110864 Query 146208 NNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGA 146267 ||| || || || || ||||| | ||| |||||||| || || || ||||||| | Sbjct 110865 CAATAGTGTCCGAGCTCTCAACTTCCAATGTAATTGTTTTCCCGGTCAAGGTTTTAACAA 110924 Query 146268 ATATTTGCATT 146278 | ||||||||| Sbjct 110925 AGATTTGCATT 110935 Score = 93.3 bits (102), Expect = 6e-14 Identities = 125/182 (69%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||| | |||||||| | ||| |||||||| || |||||||||||||| || Sbjct 110525 ATGTTATAATCAGCCAGAGTTCTTCCATCTTCTAATTGCTTCCCAGCAAAAATCAACCTC 110584 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 |||||||| || || || || || || ||||| ||| Sbjct 110585 TGCTGATCAGGTGGGATACCCTCCTTGTCTTGAATTTTTGCCTTAACATTGTCTATCGTA 110644 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 || || || || ||||| | ||||||||||| || ||||| || |||| || |||||| Sbjct 110645 TCCGAGCTCTCAACTTCCAACGTGATTGTTTTTCCAGTTAAGGTCTTAACAAAAATTTGC 110704 Query 146276 AT 146277 || Sbjct 110705 AT 110706 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| || || || | || | || | || ||||| ||| || |||||||||||| Sbjct 110250 TTCCACCCCTTAGCCTGAGAACAAGGTGAAGGGTGGATTCCTTTTGA-ATATTATAATCT 110308 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||| || | ||| || |||||||| || |||||||||| ||| ||||| || || Sbjct 110309 GCGAGAGTCCTTCCATCTTCCAATTGTTTCCCTGCAAAAATCAGTCTCTGCTGGTCTGGT 110368 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || || || ||||| || Sbjct 110369 GGGATACCCTCCTTATCCTG 110388 >seq24017 Length=104150 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| || || || ||||| ||||| ||||| | ||| || || | ||| || Sbjct 2183 ACCAAATGCAACGTGGACTCTTTCTGGATATTGTAATCAGCAAGGGTCCTCCCATCCTCA 2242 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | || || |||||||| ||||||| |||||||| || ||||| |||||||||||||| Sbjct 2243 AGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGTGGAATCCCTTCTTTATCTTG 2301 >seq131271 Length=1147 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/122 (77%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || || | ||| | ||| ||||| || ||||| ||||| | ||| |||| | ||| Sbjct 315 AACACAAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCAAGTGTTCGACCATCT 256 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || | |||||||||||||||||| || ||||| ||||| ||||||| |||||| || ||| Sbjct 255 TCAAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCTGGAGGAA-TCCTTCCTTGTCT 197 Query 146186 TG 146187 || Sbjct 196 TG 195 >seq188498 Length=2629 Score = 89.7 bits (98), Expect = 8e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | || || ||||| || |||||||| | |||||| || | ||| || Sbjct 2462 ACCAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCAGCAAGAGTCCTCCCATCCTCA 2521 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||| || |||||||||||||| || ||||| || || || || ||||| |||||||| Sbjct 2522 AGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGGATCCCTTCCTTATCTTG 2580 >seq21203 Length=98475 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || || | || | ||| |||||||| || || ||||| Sbjct 50941 GTTCCTCCCCTGAGCCTCAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCA 51000 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || || | | ||| || | ||||| ||||||||||||| ||| |||||||| ||| Sbjct 51001 GCCAGGGTCCGCCCATCTTCCAGCTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGA 51060 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||||||||| || Sbjct 51061 GGTATGCCTTCTTTATCCTG 51080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 734886558173440