Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq53084 118 7e-22 seq57534 114 8e-21 seq368178 105 4e-18 seq1350 96.9 2e-15 seq368176 91.5 9e-14 seq22395 91.5 9e-14 seq10275 91.5 9e-14 seq39326 89.7 3e-13 seq921976 86.0 4e-12 >seq53084 Length=45269 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| || | ||| ||| ||||| |||||||| || | || ||| | || Sbjct 6792 AGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGGCCATCC 6733 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| || || ||||||||||||||||||||||| || | || |||||||| Sbjct 6732 TCCAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCC 6673 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | | | | || | |||| |||||||| || | |||||||| Sbjct 6672 TGGATCTTTGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTC 6613 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || |||||||| |||||||||||| Sbjct 6612 TTACCCGTTAGGGTTTTCACGAAGATCTGCATC 6580 >seq57534 Length=59227 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | |||||||||||||| || | || || ||||| ||||||||||| | Sbjct 10066 TCCTCCCCTCAGCCTCAGCACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGC 10125 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || | || ||||||||||| ||||| || || |||| ||||||||| ||| Sbjct 10126 AAGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGG 10185 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | | || | || | ||| || Sbjct 10186 AATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCAGAACTTTCAAC 10245 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||||||||| ||||| || ||||||||||| Sbjct 10246 CTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 10293 Score = 105 bits (116), Expect = 4e-18 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||| || | || |||| | || || | ||||||||| ||||| Sbjct 10330 TTCCTTCTGGATGTTGTAATCAGCTAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAA 10389 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGA 34315 || | || ||||||||| ||| | || |||||| || || ||||| ||||| | Sbjct 10390 GATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTATC--CTGAATTTTGGCCTTTACA 10447 Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375 | | | || | |||| ||||| || | |||||||| ||||||||||| ||||| Sbjct 10448 TTGTCGATGGTGTCGGAACTCTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTTTTG 10507 Query 34376 ACAAAGATCTGCAT 34389 || ||||||||||| Sbjct 10508 ACGAAGATCTGCAT 10521 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| ||| ||||| |||||||| |||| || |||| |||| Sbjct 10766 AGGACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCGGCGAGAGTACGGCCGTCC 10825 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| || |||| ||||| || ||| | | |||||||| Sbjct 10826 TCAAGCTGCTTGCCGGCGAAGATAAGCCTTTGCTGATCTGGGGGAATTCCTTCCTTGTCC 10885 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||||| | | | | || | |||| ||||| || | |||||||| Sbjct 10886 TGGAT-TTTGGCTTTTACGTTGTCGATTGTGTCGGAACTCTCGACCTCGAGAGTGATGGT 10944 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| || |||||||| |||||||||||| Sbjct 10945 CTTTCCGGTAAGGGTTTTCACGAAGATCTGCATC 10978 >seq368178 Length=4824 Score = 105 bits (116), Expect = 4e-18 Identities = 169/239 (71%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 34153 TTCGTCGAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTT 34212 ||| ||| | || || || || | || ||||| || | ||| || ||||| ||||| Sbjct 3364 TTCTTCGCA-CCACCACGGAGACGGAGGACCAGATGAAGAGTCGACTCCTTCTGGATGTT 3422 Query 34213 GTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTG 34272 ||| |||| || ||| |||| || | |||||| || |||||||| || |||||||| Sbjct 3423 GTAATCGGCTAGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAGACGCTGCTG 3482 Query 34273 GTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGG 34331 ||| ||| | | |||||||| ||| || ||||| | || | | || | |||| Sbjct 3483 GTCTGGGGGAATTCCTTCCTTGTCTTGGATC-TTGGCTTTCACATTGTCGATTGTGTCGG 3541 Query 34332 TCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || || | ||||| ||||| || || || ||||| || |||||||||||| Sbjct 3542 AAGATTCAACCTCAAGGGTGATTGTTTTACCCGTTAGGGTTTTGACGAAGATCTGCATC 3600 >seq1350 Length=82824 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || ||||| ||||| || || | |||| |||||||| || |||||||| | Sbjct 7768 TCCACCACGGAGCCTGAGCACGAGATGAAGAGTAGACTCTTTCTGGATATTGTAGTCTGC 7827 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| || | || || | |||||| || || || || |||| |||||| || || Sbjct 7828 AAGCGTGCGACCATCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGG 7887 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||||||| ||| | || | | || | ||| | || || Sbjct 7888 AATGCCTTCCTTATCCTGTATCTTTGCCTTCACATTGTCAATGGTATCTGAGCTCTCCAC 7947 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 |||| ||||| || || || || | || |||||||||||||||||| ||| Sbjct 7948 TTCCAAGGTGATTGTCTTCCCAGTCAATGTCTTCACAAAGATCTGCATCCCTC 8000 >seq368176 Length=2289 Score = 91.5 bits (100), Expect = 9e-14 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| || || | ||| || ||||| |||||||| |||| || ||| |||| Sbjct 866 AGCACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCT 925 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || |||||||| || |||||||| || ||| | | ||||| || Sbjct 926 TCAAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTATCT 985 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||||| | || | | || | |||| || || || || | ||||| || Sbjct 986 TGGATCTTG-GCTTTCACATTGTCGATTGTGTCGGAAGACTCAACCTCAAGGGTGATTGT 1044 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||| || || || ||||| || |||||||||||| Sbjct 1045 TTTACCCGTTAGGGTTTTGACGAAGATCTGCATC 1078 >seq22395 Length=162664 Score = 91.5 bits (100), Expect = 9e-14 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 ||||| || | |||||||||||| || || | |||| || ||||| || |||||||| Sbjct 110021 AATCCACCCCTCAGCCTCAGCACAAGATGGAGAGTAGACTCCTTCTGGATATTGTAGTCC 110080 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 | ||| | | || |||||||| || || || || ||||||| ||||||||| Sbjct 110081 GCCAGTGTCCTACCATCCTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGC 110140 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | | || || || |||||| ||| | || | | ||| || | || Sbjct 110141 GGAATACCTTCTTTATCCTGTATCTTCGCCTTCACATTGTCAATCATGTCTGAGCTCTCA 110200 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| |||||||||||||| || | || || |||||||| ||||| Sbjct 110201 ACTTCCAATGTGATGGTTTTGCCAGTTAAGGTCTTAACAAAGATTTGCAT 110250 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 |||||| || | |||||||||||| || || | |||| || ||||| || ||||| || Sbjct 26630 GAATCCACCCCTCAGCCTCAGCACAAGATGGAGAGTAGACTCCTTCTGAATATTGTAATC 26689 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 | || | | || ||||||||||| || || || || |||| ||| ||||| Sbjct 26690 TGCAAGTGTCCTACCATCCTCCAACTGCTTCCCAGCAAAGATAAGCCTCTGTTGGTCTGG 26749 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTC 34338 || | | |||||| || ||||| ||| | || | | |||| || | || Sbjct 26750 TGGAATACCCTCCTTATCCTGAATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTC 26809 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | ||||||||||| || || | ||||| |||||||| ||||| Sbjct 26810 AACTTCTAATGTGATGGTTTTTCCCGTTAAGGTTTTAACAAAGATTTGCAT 26860 >seq10275 Length=89473 Score = 91.5 bits (100), Expect = 9e-14 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||| ||||| ||||| || ||||| |||||||| || | Sbjct 10214 CCACCGCGAAGACGAAGCACAAGGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCAGCT 10273 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||||||| || || || ||||| | || |||||| || || Sbjct 10274 AGGGTTCGGCCATCTTCCAACTGTTTACCAGCAAAAATCAACCTCTGCTGATCTGGTGGG 10333 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | || | | || | || | ||| || Sbjct 10334 ATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATAGTGTCAGAGCTTTCAACT 10393 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| ||||| ||||| || ||||| ||||||||||||||| Sbjct 10394 TCAAGGGTGATTGTTTTCCCGGTTAGGGTTTTGACAAAGATCTGCATC 10441 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | ||||||| ||| | ||| ||| ||||| |||||||| || | Sbjct 10670 CCGCCGCGAAGACGGAGCACCAAGTGAAGAGTTGATTCCTTCTGGATGTTGTAATCAGCT 10729 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || ||||||||||| || || || || | || ||| || || || Sbjct 10730 AGGGTTCGGCCATCTTCCAACTGCTTACCAGCAAAGATCAACCTCTGTTGATCTGGTGGG 10789 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | | | | || | |||| |||||| Sbjct 10790 ATTCCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCAATTGTGTCGGAGCTTTCGACT 10849 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| ||||| ||||| || ||||| |||||||| ||||| Sbjct 10850 TCAAGGGTGATTGTTTTCCCGGTTAGGGTTTTGACAAAGATTTGCAT 10896 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| || | || || | || ||||| ||||| || || || Sbjct 10022 TCCTTCTGAATGTTGTAATCAGCGAGGGTTCGTCCATCTTCCAATTGCTTTCCCGCAAAG 10081 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || |||| |||||| || ||| | | ||||||||| ||||| ||||| | || Sbjct 10082 ATCAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTA-GCTTTCACATT 10140 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | ||| | ||| || |||| ||||||||||| ||||| | || ||||| Sbjct 10141 GTCAATAGTATCAGAACTTTCCACCTCCAAAGTGATGGTTTTCCCGGTCAACGTCTTCAC 10200 Query 34378 AAAGATCTGCATC 34390 ||| ||||||||| Sbjct 10201 AAAAATCTGCATC 10213 >seq39326 Length=18362 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | ||||||| ||| | ||| ||| ||||| |||||||| || | Sbjct 8226 CCGCCGCGAAGACGGAGCACCAAGTGAAGAGTTGATTCCTTCTGGATGTTGTAATCAGCT 8285 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || ||||||||||| || || || || | || |||||| || || Sbjct 8286 AGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGTGGG 8345 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | | | | || | |||| |||||| Sbjct 8346 ATTCCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCAATTGTGTCGGAGCTTTCGACT 8405 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| ||||| ||||| || ||||| |||||||| ||||| Sbjct 8406 TCAAGGGTGATTGTTTTCCCGGTTAGGGTTTTGACAAAGATTTGCAT 8452 >seq921976 Length=1177 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| | || ||| | || || | |||||| ||||||||| Sbjct 896 TCCTTCTGGATGTTGTAGTCAGCTAGTGTTCGGCCATCCTCAAGCTGCTTACCTGCGAAA 955 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | |||||||||||| || | || |||||||| ||||| ||| | || | Sbjct 956 ATCAACCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTAACATTG 1015 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | || || || || | || || || || || || || || ||||| Sbjct 1016 TCAATGGTATCCGATGACTCTACCTCTAAGGTAATAGTCTTCCCAGTCAGGGTCTTCACG 1075 Query 34379 AAGATCTGCATC 34390 || ||||||||| Sbjct 1076 AATATCTGCATC 1087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 319411728213920