Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq22395 111 1e-19 seq1350 87.8 1e-12 seq21203 86.0 5e-12 seq19970 82.4 6e-11 >seq22395 Length=162664 Score = 111 bits (122), Expect = 1e-19 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| |||||||| || |||||||| || || || |||| || | |||| Sbjct 110723 AGGACTAGGTGGAGTGTTGACTCCTTTTGAATATTATAATCTGCCAGAGTGCGCCCATCT 110782 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||| || |||||| | || || |||||||| ||| || | ||||||||||| Sbjct 110783 TCCAATTGCTTCCCCGCAAAAATCAGCCTTTGTTGGTCCGGTGGAATACCTTCCTTATCT 110842 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC---GGTTTCAATGGTGATG 18290 ||||| ||| || | ||| ||||| ||| |||| || |||| || || Sbjct 110843 TGAATTTTCGCCTTAACATTATCAATAGTGT--CCGAGCTCTCAACTTCCAAT-GTAATT 110899 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| |||||||| ||||| ||||| ||||||||| Sbjct 110900 GTTTTCCCGGTCAAGGTTTTAACAAAGATTTGCATT 110935 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 ||| || || | |||||| || ||||| || || ||||| || || |||| |||| | | Sbjct 27101 TCTGAGAACAAGGTGAAGGGTGGATTCCTTCTGGATGTTATAATCAGCCAGTGTTCTTCC 27160 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 |||||| ||||| || || || | || || || || || || || | |||||||| Sbjct 27161 ATCTTCTAATTGCTTCCCAGCGAAAATCAGCCTCTGCTGGTCTGGCGGGATACCTTCCTT 27220 Query 18230 ATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC---GGTTTCAATGGT 18286 ||| |||| | ||| || | ||| |||| ||| |||| || |||| || Sbjct 27221 ATCTTGGATTTTTGCCTTAACATTATCAATTGTGT--CCGAGCTCTCAACTTCCAAT-GT 27277 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| |||| ||||| || ||||| ||||| ||||||||| Sbjct 27278 AATGGTTTTCCCGGTTAAGGTTTTAACAAAGATTTGCATT 27317 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| || | ||| |||||||| || ||||||||||| ||||| || Sbjct 26861 TCCACCACGAAGGCGAAGGACTAGGTGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGC 26920 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | ||||||||||||||| || ||| | || ||||| || || || || Sbjct 26921 AAGAGTCCTCCCATCTTCCAATTGTTTCCCTGCAAAAATCAGTCTCTGCTGGTCTGGTGG 26980 Query 18218 CACGCCTTCCTTATC 18232 | || |||||||| Sbjct 26981 GATACCCTCCTTATC 26995 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| || | ||| || ||||| || |||||||| ||||| || || Sbjct 27317 TCCACCACGGAGACGAAGAACAAGGTGGAGCGTTGACTCCTTTTGAATATTGTAATCCGC 27376 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | ||| || | ||||| || ||| |||| | | ||||||||| || Sbjct 27377 GAGAGTCCGTCCATCCTCGAGCTGTTTTCCTGCAAAGATCAAACGTTGTTGATCTGGTGG 27436 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGC--TCG 18275 | ||||||||||| |||| ||| || | ||| |||| ||| || ||| Sbjct 27437 AATACCTTCCTTATCTTGGATTTTGGCCTTAACATTATCAATCGTGT--CCGAGCTTTCG 27494 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||| | || || ||||| ||||| ||||||||||||||| Sbjct 27495 ACTTCCAATGTGATTGTCTTCCCAGTCAAGGTTTTAACAAAAATTTGCATT 27545 >seq1350 Length=82824 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || ||||| ||||| ||||||||||| || |||| ||| | | ||| || | ||| Sbjct 8249 TGCAGGGTTGACTCTTTCTGAATGTTGTAATCTGCCAATGTCCTCCCATCCTCAAGTTGC 8308 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| ||||| || || ||| || | |||||||| || ||| | | Sbjct 8309 TTCCCGGCAAAGATCAGTCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCTTGAATCTTT 8368 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | ||| ||| || || ||||| ||||||| | |||||||| Sbjct 8369 GCCTTTACATTGTCAATAGTATCTGAACTTTCAACTTCAAGGGTGATGGTCTTGCCGGTA 8428 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | ||| || ||||| || ||||| Sbjct 8429 AGTGTCTTGACAAAGATCTGCAT 8451 >seq21203 Length=98475 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || | || | |||||| ||||||||||| ||||||||||| || || Sbjct 50943 TCCTCCCCTGAGCCTCAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGC 51002 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | |||||||| ||||| || ||| | || ||||| || ||||| || Sbjct 51003 CAGGGTCCGCCCATCTTCCAGCTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 51062 Query 18218 CACGCCTTCCTTATC 18232 | |||||| ||||| Sbjct 51063 TATGCCTTCTTTATC 51077 >seq19970 Length=23264 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || ||||| ||||| || || | |||| || |||||| | |||| Sbjct 112 TGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCAAGTGTTCGACCATCTTCAAGTTGT 171 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| | || | ||||||||||| || | |||||||| || ||||| | Sbjct 172 TTTCCAGCAAAAATTAACCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGAATTT-T 230 Query 18243 TGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || | | || ||| |||||| | ||| || | || ||| |||| || || Sbjct 231 TGTTTTAACATTGTCAATAGTGTCGGAGTTCTCAACCTCGAGTGTAATGGTTTTTCCAGT 290 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 | ||| || ||||| |||||||| Sbjct 291 TAGTGTCTTAACAAAGATTTGCAT 314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 375046189789215