Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq20754 82.4 6e-11 >seq20754 Length=265263 Score = 82.4 bits (90), Expect = 6e-11 Identities = 161/233 (69%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||||||||| ||||| ||||| ||||| ||| | || || || ||| Sbjct 216606 CATGCAGATTTTTGTTAAAACTTTAACGGGCAAGACGATCACCCTTGAAGTTGA---GAG 216550 Query 24891 C---GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTA--CCGGTT 24945 | || | | || | ||| |||| ||| | | | | | ||| ||| ||| || Sbjct 216549 CTCAGATACCATCGACAATGTAAAGGCAAAGA-TCCAGGACAAGGAGG-GTATTCCTCCA 216492 Query 24946 GACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGAT 25005 |||||||| | || |||| ||| || |||||||| || ||| | ||| | ||| Sbjct 216491 GACCAGCAGAGGTTGATATTTGCTGGGAAACAACTTGAGGATGGAAGGACCCTTGCAGAT 216432 Query 25006 TACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 |||| || ||||| || | || |||||||| ||| | || || | ||||| Sbjct 216431 TACAATATTCAGAAGGAATCAACCCTTCATTTGGTGCTTCGTCTGAGGGGAGG 216379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413564789145440